BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491093
Length=1043
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35530.1 | Symbols: | phosphatidylinositolglycan-related | ... 1524 0.0
> AT4G35530.1 | Symbols: | phosphatidylinositolglycan-related
| chr4:16871734-16873652 REVERSE LENGTH=1151
Length=1151
Score = 1524 bits (825), Expect = 0.0
Identities = 978/1051 (93%), Gaps = 14/1051 (1%)
Strand=Plus/Plus
Query 1 TCTCTTCACCGGTAAGAGAAGCCGGTTTCAGATTTGATCTATTCGAAGAATTGCGGCTTT 60
|||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 12 TCTCTTTACCGGTAAGAGAAGCCGGTTTCAGATTTGATCAATTCGAAGAATTGTGGCTTT 71
Query 61 CGCTCGTCGGGAT-AATCCTTGCTTCTTCCTGTTTGATAGATTTCTACTGTGTTTTAGAG 119
|| |||| ||| | |||||||||||| |||| ||||||||||| |||||||||||| |||
Sbjct 72 CGTTCGTTGGG-TGAATCCTTGCTTCGTCCTTTTTGATAGATTGCTACTGTGTTTTCGAG 130
Query 120 GACA-TTGTGTGGGGAATAGTTGGCGAGATTTATGGGATTTCAACG-GGGGTTTTTCTAA 177
|| | |||||||| | |||||| | |||||||||| |||||||| | |||||| || |||
Sbjct 131 GA-AGTTGTGTGGAG-ATAGTTAGAGAGATTTATGAGATTTCAA-GAGGGGTTATTATAA 187
Query 178 TGCACGCGTGTTGTTCGACGGAAAGCCGCAGAGAAGTTTTGTTGCTGTCTGATTTGGCTG 237
|||||| || ||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct 188 CGCACGCATGGTGTTCGACGGAAAGCCGCAGAGAAGTTTTGTTGCTATCCGATTTGACTG 247
Query 238 AGACTCAAAAGTTTGAAAATTGTTGCTTGGGTATTGAG-AAGCTAGTCTTATGCAGGTTC 296
|||||| ||||||||||||||||| ||||||||||||| |||||| ||| ||||||||
Sbjct 248 AGACTC-AAAGTTTGAAAATTGTTACTTGGGTATTGAGAAAGCTAACCTTGGGCAGGTTC 306
Query 297 CTATATGAGTT-GGAGT-AAACGACGGTGATACA-TTGAGTGTTTTTCAACTAAACTAGC 353
|||||||||| ||||| |||||||||||||||| |||| ||||||||||||||||||||
Sbjct 307 GTATATGAGTTGGGAGTAAAACGACGGTGATACATTTGACTGTTTTTCAACTAAACTAGC 366
Query 354 TTTCG-AATGGTGAGCTCGTCTGTTTCAAATAAGAGATACACTTACATACACGAAAGTGA 412
||| | ||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 367 TTT-GAAATGGTGAGCTTGTCTGTTTCGAATAAGAGATACACTTACATACACGAAAGTGG 425
Query 413 AAGTAACTCAACTAGAGAAGCCATTGACATTCATCATGTGATTATCAACGGAGGCAGAGC 472
|||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||| |
Sbjct 426 AAGTAAGTCAACTAGAGAAGCCATTGATATTCACCATGTGATTATCAACGGAAGCAGCGG 485
Query 473 AACTGGTTATGCCCGTCGTAGGGGGATTGGTTTCTTCCTTGTGCTTCTGGCGAGTTCTAT 532
||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 486 AACTGGTTATGCCCGTCGTTGGGGGCTTGGTTTCTTCCTTGTGTTTCTGGCGAGTTCTAT 545
Query 533 CTACTTTTTTCTTGGAAAGGAAAATCCAGTTAGAACTCTTTCTTGGGGCTGCCTTTTAAG 592
|||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 546 GTACTTTTTGCTTGGAAAGGACAATCCAGCTAGAACTCTTTCTTGGGGCTGCCTTTTAAG 605
Query 593 TGGTTTCTTAGTTATGCTACAAAGTCGCAAGTTCGTCAACAAAGAATCTGTGATAATCAT 652
||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |
Sbjct 606 TGGTTTCTTGGTTATGCTACATAGTCGCAAGTTCGTCAAGAAAGAATCTGTGATAATCTT 665
Query 653 GCCAACCTTCGGGATCCAACTTGAAACTCAATATTTAAGTGGAAAAACTGTCTCCAGGTT 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 GCCAACCTTCGGGATCCAACTTGAAACTCAATATTTAAGTGGAAAAACTGTCTCCAGGTT 725
Query 713 TATCCCTATTGGCAAGATTTTGAAGCCTGTGTTGGTCGAATGTGTCACTCCCATTACATG 772
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 726 TATCCCTATTGACAAGATTTTGAAGCCTGTGTTGGTCGAATGTGTCACTCCCATTACGTG 785
Query 773 CTACTGGAGTCTCTCTTTATTTCTGCGTGGCGAAGAACAACTTACATTGGTGTTTAAGGA 832
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 786 TTACTGGAGTCTCTCTTTATTTCTTCGTGGTGAAGAACAACTTACATTGGTGTTTAAGGA 845
Query 833 ACTGCGTCCTCCATTGAAGATGTTGGTTCCCATTTGGAAAGCATTGTGTGCTGCTATCGG 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 ACTGCGTCCTCCATTGAAGATGTTGGTTCCCATTTGGAAAGCATTGTGTGCTGCTATCGG 905
Query 893 CACAGACCACCAAAGTGAAACGATAGCTGAAGAAGAATATAATGTATCTAGTTAACTGAA 952
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 906 TACAGACCACCAAAGTGAAACGATAGCTGAAGAAGAACATGATGTATCTAGTTAACTGCA 965
Query 953 GTTGTGATTAGAGAACTTGTAGATTTGTTGCTTGCTGTTGGCAGTTTTGTTTGGAAGATG 1012
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 966 GTTGTGATTAGAGAACTTGTAGATTTGTTACTTGTTGTTGGCAGTTTTGTTTGGAAGATG 1025
Query 1013 ATCACACAATATGTTCTGTAATGGGAGAATT 1043
|||||||||||||||||||||||||||||||
Sbjct 1026 ATCACACAATATGTTCTGTAATGGGAGAATT 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51138361646
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5