BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491095
Length=1439
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35510.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2047 0.0
> AT4G35510.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G17540.3);
Has 182 Blast hits to 179 proteins in 73 species: Archae -
0; Bacteria - 87; Metazoa - 17; Fungi - 9; Plants - 50; Viruses
- 0; Other Eukaryotes - 19 (source: NCBI BLink). | chr4:16860452-16862372
REVERSE LENGTH=1474
Length=1474
Score = 2047 bits (1108), Expect = 0.0
Identities = 1364/1478 (92%), Gaps = 56/1478 (4%)
Strand=Plus/Plus
Query 1 AATTGGAACAAAATTCTCTTGtcttcttca---tcctcctcctcctttctctctgcaaac 57
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 13 AATCGGAACAAAATTCTCTTGTCTTCTTCATCCTCCTCCTCCTCCTTTCTCTCTGCAAAC 72
Query 58 cctaattt-c---ct--t----t-tctcatcttcctctctctctctcttttctTCCCAAA 106
|||||||| | || | | |||||||||||||| ||||||||||||||||| |||
Sbjct 73 CCTAATTTCCTTTCTCCTAAACTCTCTCATCTTCCTCTTTCTCTCTCTTTTCTTCCTAAA 132
Query 107 TGATAAGGTAACTTCAAAACTACGACAATTCAATACTCT-AAGGAAACGCCAAGATTTGG 165
||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| |
Sbjct 133 TGATAAGGTAACTTCAAAACTACGACAATTCAACACTCTAAAGGACACGCCAAGATTTAG 192
Query 166 GTTTTTAGC-TGATT-TATAATGGAGACGAATCCGTCTGACATGAATCAGCTCGATTCCG 223
||||||||| ||||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct 193 GTTTTTAGCTTGATTCAAAAATGGAGACGAATCCGTGTGACATGAATCAGCTCGATTCCG 252
Query 224 ATTCGCATCTCCCTCCTCGAAAGCGATTACTTGCTGGATTCAAGAAACTAAACTCCAACG 283
|||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct 253 ATTCGCATCTCCCTCCTCGAAAACGATTACTTGCTGGATTCAAGAAATTTAACTCCAACG 312
Query 284 GC---GATGGATCTTTTCCTTCAGATTTCGCTTCTTCTTCCTCTACTTCAAACTCAAACG 340
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 GCATTAATGGATCTTCTCCTTCAGATTTCGCTTCTTCTTCCTCTACTTCAAACTCAAACG 372
Query 341 GATCTTCCTCTGCTTCCACCCATGTTCAGACCCATCTCGACAACTTGCTATCTTC-CCGT 399
|||||||||||||||||||| |||||||||||||||||| ||||||| ||||||| || |
Sbjct 373 GATCTTCCTCTGCTTCCACCAATGTTCAGACCCATCTCGGCAACTTGTTATCTTCTCC-T 431
Query 400 TTCAACAATGACCAGTCACCGGAAGAGCTCGTGGAGGCAACGAGATCTGCAGCTGCTTTA 459
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 432 TTCAACAATGACCAGTCACCTGAAGAGCTCGTGGAGGCAACGAGATCTGCAGCTGCTTTA 491
Query 460 GCGGTTAAAGCTGCAAAGGCGGCCAGAGCTATTGCGAACGAGAAGGCTTTGATTTCCGCA 519
|||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 492 GCGGTTAAAGCTGCAAAGGCTGCGAGAGCTATTGCTAACGAGAAGGCTTTGATTTCCGCT 551
Query 520 AAGGCGATTGCTGCGGCTAAGAGGGCATTGGAATTGGTTGATTCTTTCCCTAAAGAAGCA 579
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 552 AAGGCGATTGCTGCGGCTAAGAGGGCATTGGAATTGGTTGATTCTTTTCCTAAAGAAGCA 611
Query 580 ATGGCTGATTGCAAGGAGAGGTCTCCTAAGAAGAACAAGCAGAAGAAACATGTCCCCGTC 639
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 612 ATGGCTGATTGCAAGGAGAGGTCTCCTAGGAAGAACAAGCAGAAGAAACATGTCCCCGTC 671
Query 640 GAGCTCTTGTATTCAAAGGGACAGCTAAGAGACGAGGACGATGATTTAGCGCGTAGGTTG 699
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 672 GAGCTCTTGTATTCAAAGGGGCAGCTAAGAGACGAGGAAGATGATTTAGCGCGTAGGTTG 731
Query 700 CATCGAGCTATAGGCAATACAT---ACCCTAGAGTCTTGAGAACTTGCTCGGGATTCGAG 756
||||||||||||| |||||| | | |||||||||||||||||| || | | | |
Sbjct 732 CATCGAGCTATAGACAATACGTCGTATCCTAGAGTCTTGAGAACTAGC--G--A---G-G 783
Query 757 GAGAATGGTCAGAGATACAAGAAGCAGAAGAAGAACAAGACCGTAGTTGAAGGTGGGAGT 816
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 784 -AGAATGGTCAGAGATACAAGAAGCAGAAGAAGAACAAGAGCGTAGTTGAAGGTGGGAGT 842
Query 817 AGTAGTATTGTAGTGACCGGTTCTATGAATGACATTGCTGGAGTCGTGGATTCAGACAGC 876
||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 843 AGTAGTATTATAGTGACCGGTTCTATGAAAGACATTGCTGGAGTTGTGGATTCAGACAGC 902
Query 877 TCGTATGAAGGATTAGAGATAGCTAGATCAAACAGGAATGAAGTGGATTCAA-GACTGAT 935
|| ||||||||||||||||||||||||||||||||| |||||| |||||| | | |||||
Sbjct 903 TCCTATGAAGGATTAGAGATAGCTAGATCAAACAGGGATGAAGCGGATTCGATG-CTGAT 961
Query 936 GATGGAGAAAGCAGAGGAAGAAAATAACTCATTGGTTAAAAGAAGAGGAAGAGTAGTGAA 995
|||||||||| ||| |||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 962 GATGGAGAAATCAGGGGAAGAAAGCAACTCATTGGTTAAAAGAAGAGGAAGAGT-G--AA 1018
Query 996 GCTAAAGAAGCTTCCTTTGAGCATTTGTAATTCTAGAAATCAAGAAAATGGAACTTCCCC 1055
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1019 GCTAAAGAAGCTTCCTTTGAGCATTTGTAATTCTAGAAATCAAGAAAACGGAACTTCCTC 1078
Query 1056 CGCGTCTCCATTACCGGTGGCTCAGCCGCAGGAGGACAGTGGTGCGATAACGGTCATACC 1115
||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| |
Sbjct 1079 CGCGTCTCCATTACCGGTGGCTCAGCCGCAGGAAGACGGTGGTGCGATCACGGTCATAGC 1138
Query 1116 AGGATCGTCGTCTTGGAAATGCCAGGACCTAAAGGCACCAGAATGCGTGAAGCAGAACAA 1175
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1139 AGGATCGTCGTCTTGGAAATGCCAGGACATAAAGGCACCAGAATGTGTGAAGCAGAACAA 1198
Query 1176 AGCCGTACGGTCATAGTG--T-C--T-----ACAGAAAAAATGACTCtttttttCAAGAT 1225
|||||||||||||||||| | | | |||||||||||||||||||||||||||||
Sbjct 1199 AGCCGTACGGTCATAGTGACTACCATTGTCTACAGAAAAAATGACTCTTTTTTTCAAGAT 1258
Query 1226 TTGGTCAGCATTGCCATTTTCAGTAGAAGAATCACATTGTTGTTTCCTTTTTTGGGTGTG 1285
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1259 TTGGTCAGCATTACCATTTTCGGTAGAAGAATCACATTGTTGTTTCCTTTTTTGGATGTG 1318
Query 1286 TTTGAA--TTTATGTTATATATTGTTAAATATATACATAATACATATATGGGTTTATTTG 1343
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1319 TTTTAAAATTTATGTTATATATTGTTAAATATATACATAATACATATATGGGTTTATTCG 1378
Query 1344 CAATTGCAGTTGTGTAGAAGAAAGTTTGATATTTTGGATTAATAGATGCAATAAAGTGAT 1403
|| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1379 CAGTTG---TTGTGTAGAAGAAAGTTTGATATTTTGGATTCATAGATGCAATAAAGTGAT 1435
Query 1404 GTA-tt-ttttttGTTGAATGATAAGTTTTTTCTTCAT 1439
||| || |||||||||||||| ||||||||||||||||
Sbjct 1436 GTACTTGTTTTTTGTTGAATGGTAAGTTTTTTCTTCAT 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70933370085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5