BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491099
Length=865
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35480.1 | Symbols: RHA3B | RING-H2 finger A3B | chr4:168520... 1205 0.0
> AT4G35480.1 | Symbols: RHA3B | RING-H2 finger A3B | chr4:16852074-16852947
REVERSE LENGTH=874
Length=874
Score = 1205 bits (652), Expect = 0.0
Identities = 804/875 (92%), Gaps = 19/875 (2%)
Strand=Plus/Plus
Query 1 ATTATAACTTGGATCAGAttcttcttcttctctaaacaacaacaaaat-t-tcttccctc 58
|||||||||||||||||||||||||||| ||||||||||||||||| | | |||||| ||
Sbjct 1 ATTATAACTTGGATCAGATTCTTCTTCTCCTCTAAACAACAACAAAGTCTCTCTTCCTTC 60
Query 59 tgtctttcacaactttcctctttctctAAAGACAAAACTCAAAATCAAAACAAAATGACT 118
|||||||||| | ||||||||| | ||||| ||| ||||||||| |||||||||||||||
Sbjct 61 TGTCTTTCAC-A-TTTCCTCTTCCCCTAAAAACAGAACTCAAAACCAAAACAAAATGACT 118
Query 119 CGCTCCTCTAGATTCCTTGGTACGGCGTCGCCTCCACCGCCGGAAGAAATCCTCGCCGCC 178
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 119 CGCTCCTCTAGATTCCTTGGTACGGCGTCGCCTCCACCACCGGAAGAAATCCTCGCCGCC 178
Query 179 GAAACCGACATGGTTGTGATTCTCTCAGCCCTTCTCTGCGCTCTCATATGCATAGCCGGC 238
||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||
Sbjct 179 GAAACCGACATGGTTGTGATTCTCTCAGCACTTCTCTGCGCTCTCGTATGCGTAGCCGGT 238
Query 239 TTAGCCGCCGTAGCTCGCTGCGCTTGGCTCCGCCGTCTCACCGGCGCTAATTCCGCCGCC 298
|||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||
Sbjct 239 TTAGCCGCCGTAGCTCGCTGCGCTTGGCTCCGCCGTCTCACCGGAGTTAATCCCGCCGCC 298
Query 299 GTCGGAGAATCACCGCCGCCGAACAAAGGCCTCAAGAAAAAAGCACTTCAAGCTCTCCCT 358
||||||||| | || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 299 GTCGGAGAAGCTCCACCGCCTAACAAAGGCCTCAAGAAAAAAGCACTTCAAGCTCTCCCT 358
Query 359 AAATCAACTTACACCGCCTCTGCTTCTACCGCCACCGCCGCAGATGATTTATCATGCTCC 418
||||||||||||||||||||||| ||||||||| ||||||| || ||| || | |||||
Sbjct 359 AAATCAACTTACACCGCCTCTGCCTCTACCGCCGCCGCCGCTGACGATCTACCGTGCTCT 418
Query 419 TCCGGCGGAGAAGGAGATTCATCCACCGAGTGTGCGATATGCATAACGGAATTTTCCGAC 478
|| | |||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 419 TCAGTCGGAGACGGAGATTCATCCACCGAGTGTGCAATATGCATAACGGAATTTTCGGAG 478
Query 479 GGCGACGAGATCAGGATCTTACCGCTGTGTAGTCACGCCTTCCACGTGGCGTGTATAGAT 538
||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GGCGAAGAAATCAGAATCTTACCGCTGTGTAGTCACGCCTTCCACGTGGCGTGTATAGAC 538
Query 539 AAATGGTTGACTTCACGGTCGTCGTGTCCTTCTTGTCGTCGGATATTGGTGCCGGTGAAG 598
|| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 539 AAGTGGTTGACTTCACGGTCGTCGTGTCCGTCTTGTCGTCGGATACTGGTGCCGGTGAAG 598
Query 599 TGTGATAGGTGTGGCCACCATGCTTCCACGGCGGAGACTCAGATCAAAGATCAACCTCCT 658
|||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 599 TGTGATAGGTGTGGGCACCATGCTTCGACGGCGGAGACTCAGGTCAAAGATCAACCTCCT 658
Query 659 CATCACCAACATCCTTCACAGTTCACTTCCGCCATTATTCCTGCTTTTCTTCCTTGAGAT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 659 CATCACCAACATCCTTCACAGTTCACTTCCGCCATTATTCCTGCTTTTCTTCCTTGAAAT 718
Query 719 -TTT-CACTTTATTTA-TTTTTATAATTTGCTAAAAATATCGGCATGATTAAAGAAAAGT 775
||| ||||||||| | |||||||||||||||||||||||||||||||||||| | ||
Sbjct 719 GTTTTCACTTTATTAAATTTTTATAATTTGCTAAAAATATCGGCATGATTAAA-A---GT 774
Query 776 AAAGT-TCTAATTAATTAGGAATTAGTGTGATCTTTAGTTA----CTTCGATTTTTCTCC 830
||||| | |||||||||||||||||||| ||||||||||| ||| || |||||||
Sbjct 775 AAAGTAT-TAATTAATTAGGAATTAGTG--ATCTTTAGTTAAGTACTTTTATATTTCTCC 831
Query 831 ACTGTAATCCACTGTTATGAATTAATCAGATGAAA 865
||||||||| ||||| ||||||||||||||||||
Sbjct 832 TCTGTAATCCTCTGTTCTGAATTAATCAGATGAAA 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42196683480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5