BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491108
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35390.1 | Symbols: AGF1 | AT-hook protein of GA feedback 1 ... 1997 0.0
> AT4G35390.1 | Symbols: AGF1 | AT-hook protein of GA feedback
1 | chr4:16829326-16830692 FORWARD LENGTH=1367
Length=1367
Score = 1997 bits (1081), Expect = 0.0
Identities = 1268/1351 (94%), Gaps = 42/1351 (3%)
Strand=Plus/Plus
Query 1 TTCACATGAAGATCTAGATCTGGGTCCAGACAAATTTCACCGACCCAGCTCTTTCACATA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 TTCACATGAAGATCTAGATCTGGGTCCAGACAAATTTCACCGACCCAGCTCTTTCACATA 68
Query 61 TTTAGACctctctctctctTATTA-TCAGTAAGGTTTTGTTCTCTCTTGTCGTCTTCTTG 119
| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 69 TGTAGACCTCTCTCTCTCTAATTATTCAGTAAGGTTTTGTTCTCTCTTGTCGTCTTCTTG 128
Query 120 TTTTGTCCGTAGCATTA-T--TAATCAAACTCAGTCTCTGAAATACTCTCAGTGACAAAC 176
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 129 TTTTGTCCGTAGCATTATTAATAATCAAACTCAGTCTCTGAAATACTCTCAGTGACAAAC 188
Query 177 CACTTCTGTCGACTTTTGTCTTTTGTCTCT--C-A-CTATAACCAAAACAATCCAAAAAC 232
|||||||||||||||||||| ||||||||| | | |||||||||||| |||||||||||
Sbjct 189 CACTTCTGTCGACTTTTGTC-TTTGTCTCTCACTAGCTATAACCAAAAAAATCCAAAAAC 247
Query 233 CC--A--A-A-------------GTTATCAATGGCTGGTTATATGCACCCTCTTCTAGGG 274
|| | | | |||||||||| || |||||||||||||||||||||||
Sbjct 248 CCAAACCACAGTTTCTTGTTTTTGTTATCAATGTCTAGTTATATGCACCCTCTTCTAGGG 307
Query 275 CAAGAACTGCATCTACAGAGACCTGAAGATTCCAGAACCCCACCTGATCAAAATAACATG 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 CAAGAACTGCATCTACAGAGACCTGAAGATTCCAGAACCCCACCTGATCAAAATAACATG 367
Query 335 GAACTTAACAGATCTGAAGCAGACGAAGCCAAGGCCGAGACCACTCCCACCGGCGGAG-C 393
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 368 GAACTTAACAGATCTGAAGCAGACGAAGCAAAGGCCGAGACCACTCCCACCGGTGGAGCC 427
Query 394 AGCCAGCTCAGCCACAGCCTCTGGCTCTTCCTCCGGACGCCGTCCACGTGGTCGTCCTGC 453
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 428 A-CCAGCTCAGCCACAGCCTCTGGCTCTTCCTCCGGACGTCGTCCACGTGGTCGTCCTGC 486
Query 454 AGGTTCAAAAAATAAACCCAAACCTCCGACGATTATAACCAGAGATAGTCCTAACGTCCT 513
|||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 487 AGGTTCCAAAAACAAACCCAAACCTCCGACGATTATAACTAGAGATAGTCCTAACGTCCT 546
Query 514 TAGATCCCACGTTCTTGAAGTCACCTCTGGTTCGGACATATCCGAGGCTGTCTCCACCTA 573
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 547 TAGATCACACGTTCTTGAAGTCACCTCCGGTTCGGACATATCCGAGGCAGTCTCCACCTA 606
Query 574 TGCCACTCGTCGCGGCTGCGGCGTTTGCATTATAAGCGGCACTGGTGCGGTAACTAACGT 633
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 607 CGCCACTCGTCGCGGCTGCGGCGTTTGCATTATAAGCGGCACGGGTGCGGTCACTAACGT 666
Query 634 CACAATACGGCAACCGGCGGCTCCGGCGGGTGGAGGTGTGATTACTCTGCATGGTCGGTT 693
||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 667 CACGATACGGCAACCTGCGGCTCCGGCTGGTGGAGGTGTGATTACCCTGCATGGTCGGTT 726
Query 694 TGAGATTTTGTCTTTGACTGGGACTGCGCTTCCGCCGCCTGCGCCACCGGGAGCAGGAGG 753
||| |||||||||||||| || ||||||||||| |||||||| |||||||||||||||||
Sbjct 727 TGACATTTTGTCTTTGACCGGTACTGCGCTTCCACCGCCTGCACCACCGGGAGCAGGAGG 786
Query 754 TTTGACGGTGTATCTAGCCGGAGGTCAAGGACAAGTTGTAGGAGGGAATGTGGCTGGTTC 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 TTTGACGGTGTATCTAGCCGGAGGTCAAGGACAAGTTGTAGGAGGGAATGTGGCTGGTTC 846
Query 814 GTTAATTGCTTCGGGTCCGGTTGTGTTGATGGCTGCTTCTTTTGCAAACGCAGTTTATGA 873
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 847 GTTAATTGCTTCGGGACCGGTAGTGTTGATGGCTGCTTCTTTTGCAAACGCAGTTTATGA 906
Query 874 TAGATTACCGATTGAAGAGGAAGAAACTCCACCGCCGAGAGCCACCGGGGTGCAGCAGCA 933
||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 907 TAGGTTACCGATTGAAGAGGAAGAAACCCCACCGCCGAGAACCACCGGGGTGCAGCAGCA 966
Query 934 GCAGCCGGAGGCGTCTCAGTCGTCGGAGGTTACGGGGAGTGGGGCCCAGGCGTGTGAGTC 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GCAGCCGGAGGCGTCTCAGTCGTCGGAGGTTACGGGGAGTGGGGCCCAGGCGTGTGAGTC 1026
Query 994 AAACCTCCAAGGTGGAAATGGTGGAGGAGGTGTTGCTTTCTACAATCTGGGAATGAATAT 1053
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1027 AAACCTCCAAGGTGGAAATGGTGGAGGAGGTGTTGCTTTCTACAATCTTGGAATGAATAT 1086
Query 1054 GAACAATTTTCAATTCTCCGGGGGAGATATTTTCGGTATGAGCGGCGGTAGCGGAGGAGG 1113
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1087 GAACAATTTTCAATTCTCCGGGGGAGATATTTACGGTATGAGCGGCGGTAGCGGAGGAGG 1146
Query 1114 AGGCGGCGGC-CTGACTAGACCCGCATTTTAGCGTGTTATAGCGTTTTGGTGACACCTTT 1172
|| ||||| | |||||||||||| |||||| || || |||||||||||||||||||||
Sbjct 1147 TGGTGGCGGTGC-GACTAGACCCGCGTTTTAGAGT-TT-TAGCGTTTTGGTGACACCTTT 1203
Query 1173 TGTTGCGTTTG--TGTTTGACCTCAAACTACTAGGCTACTAGCTATAGCGGTTGCGAAAT 1230
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 TGTTGCGTTTGCGTGTTTGACCTCAAACTACTAGGCTACTAGCTATAGCGGTTGCGAAAT 1263
Query 1231 GCGAATACTAGGGtttt-tttATTTATATTT-GCTTTCTCGTAAAACTTGGTGTGTGAAA 1288
||||||| |||| |||| ||||||||| ||| | |||||| |||||||||||||||||||
Sbjct 1264 GCGAATATTAGG-TTTTATTTATTTATTTTTTG-TTTCTCTTAAAACTTGGTGTGTGAAA 1321
Query 1289 AA-GAAAACGAACGCT-AAAGTTTCCTTTTT 1317
|| ||||||||||||| ||| ||||||||||
Sbjct 1322 AAAGAAAACGAACGCTTAAA-TTTCCTTTTT 1351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64808903595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5