BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491115
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35320.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 924 0.0
> AT4G35320.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G17300.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:16805869-16806655 REVERSE LENGTH=787
Length=787
Score = 924 bits (500), Expect = 0.0
Identities = 715/808 (88%), Gaps = 58/808 (7%)
Strand=Plus/Plus
Query 1 ACTAATCAATCTCTCACATT--CA-TCTTCATCTTCTTCAACCTCTCTCCACACGAAGAA 57
|||||||||||||||||||| || || || |||||||||| ||||||| |||| | ||
Sbjct 1 ACTAATCAATCTCTCACATTCACATTCATCTTCTTCTTCAATCTCTCTCAACAC--A-AA 57
Query 58 GAACAAACAACAAAAGCAATGAGCTCAATGATGGAGACTCTCCAGATTCGTAAACCCACT 117
||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GAA-GAACAA-AGAAGTTATGAGCTCAATGATGGAGACTCTCCAGATTCGTAAACCCACT 115
Query 118 TCTCTCCCCGTTTCTCAACGTCCTAATGCAGCAGCCACCGCCGACGATGAGCCAGGTCTC 177
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 116 TCCCTCCCCGTTTCTCAACGCCCTAATGCAGCAGCCACCGCCGACGATGAGCCTGGTCTC 175
Query 178 ATCCGCCGTCGtctctcttctctctcactcaacctctcAAACCAACCAGCAGCGATCGCA 237
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 176 ATCCGCCGTCGTCTCTCTTCTCTATCACTCAACCTCTCAAACCAACCAGCAGCGATCGCA 235
Query 238 GCTCGATTCCCGAGATCCAAATCTGTTTCCGCCATGGGAGAACAAGCAGGAAGCTCTGTG 297
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 GCTAGATTCCCGAGATCCAAATCTGTTTCCGCCATGGGAGAACAAGCAGGAAGCTCTGTG 295
Query 298 AAAGAATGGTGGGAATGGGGTTGGTCATGGATTCTTTCAAGAAAACCGATTTTCATCAGA 357
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 296 AAAGAATGGTGGGAATGGGGTTGGTCATGGATCCTTTCAAGAAAACCTATATTCATCAGA 355
Query 358 GATCTTGAGCTTAACAAAGACGAAGCTAAATCAATTGGTTCACAAAACAGAGGAAGTATA 417
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 356 GATCTTGAGCTTAACAAAGACGAAGCTAAATCGATTGGTTCACAAAACAGAGGAAGTATA 415
Query 418 ATGCACGTTTTCTTCAAACTCCGATCTCAGATCCGTAATCTCATGGGACCTTCTTCATCA 477
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 416 ATGCACGTTTTCTTCAAACTCCGATCTCAGATCCGTAATTTCATGGGACCTTCTTCAGAA 475
Query 478 GATTCTCTTCCTCTTTCTTGCAAATACAAGCGTCAACGATAAAATGATTCTTGCTTCTTG 537
|||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 476 GATTCTCTTCCTCTTTCTTGCAAATACAAGCGTCAACGATAAAATGATTCATA-T----- 529
Query 538 CTTCACATGGGGTTGAGATTTTGTGATTTGTCTCTTCttttttttACTTTCGTGCAATGG 597
| | || ||||||||||||||||||||| |||||||||| ||||| |||||||||
Sbjct 530 ----A-A-GG--TTGAGATTTTGTGATTTGTCTGTTCTTTTTTT-ACTTTTGTGCAATGG 580
Query 598 AGTATAATGCTTG-ATG-TT-Gtattttgctat--aa--tt-a------attt-gcctag 642
||||||||| || || || || |||| | | || || | |||| || ||
Sbjct 581 AGTATAATGAATGTATAATTCGTCTTTTTTTTTTTAAACTTGATGTTGTATTTTGC-TAT 639
Query 643 a-tta-tt-----a-atca--att--t-a-tttattt-t---atttGTGGTTACGAGTTT 684
| ||| || | || | ||| | | ||||||| | ||||||||||||||||||
Sbjct 640 AATTAATTTGCCTAGATTATTATTAATCAATTTATTTATTTTATTTGTGGTTACGAGTTT 699
Query 685 GTGGCTGTGCAGTTGTATTTTTGTATTTTAATAACCATGCAAATTATATAGAAAA-TCCG 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 700 GTGGCTGTGCAGTTGTATTTTTGTATTTTAATAACCATGCAAATTATATAGAAAAATCCG 759
Query 744 TTATATACGTTTTAATCTTTTACGCGCC 771
|||| | |||||||||||||||||||||
Sbjct 760 TTATTTTCGTTTTAATCTTTTACGCGCC 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5