BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491128
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35220.1 | Symbols: | Cyclase family protein | chr4:1675257... 1807 0.0
> AT4G35220.1 | Symbols: | Cyclase family protein | chr4:16752571-16754305
FORWARD LENGTH=1223
Length=1223
Score = 1807 bits (978), Expect = 0.0
Identities = 1151/1232 (93%), Gaps = 21/1232 (2%)
Strand=Plus/Plus
Query 1 CCAAAATGGTCAAAATCATTTCATCTTCTTCGTGATGATCGAAATCATCAGTGAGTGACC 60
|||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||
Sbjct 1 CCAAAATGGTCAAAATCAATTCATCTTCTTCGTGATGATCGTAATCACCAACCAGTGACC 60
Query 61 TAACAATGGCCGttcctccattattcctcctcctcacactcctatctctcccttctcttc 120
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 61 TAACAATGGCCGTTCCTCCATTATTCTTCCTCCTCACACTCCTCTCTCTCCCTTCTCTTC 120
Query 121 ttatctccgcctctgcctccGATGCCTATCCTTCTATTCCCGGCACCGCTCCTATCGACG 180
||||||||||| ||| ||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 121 TTATCTCCGCCGGTGCTTCCAATGCCTATCCTTCTATTCCCGGAACCGCTCCTATCGACG 180
Query 181 GAGGTTTCACCGATGAACTTAAACCCATCCGCCGTGAAGTCTACGGTCATGGCAAAATCT 240
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 181 GAGGTTTCACCGATGAACTTAAACCCATTCGCCGTGAAGTCTACGGGAATGGCAAAATCT 240
Query 241 ACGACATCAGTCACCGTTACACTCCGGATATGCCGTCGTGGGACTCATCGGAAGGACTCG 300
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 241 ATGACATCAGTCACCGTTACACTCCGGAGATGCCGTCGTGGGACTCATCGGAAGGAATCG 300
Query 301 GACGGTTTCTATGGTTAGCTGCGAGTATGAAGAATGGATCTCTCGCTAATAACTCTGAAA 360
||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 301 GACGGTTCCTATGGTTAGCTGCGAGTATGAAGAACGGATCTCTTGCTAATAACTCTGAAA 360
Query 361 TGAAGA-TCCCTACGCACACTGGTACTCACGTTGATTCACCTGGTCACGTCTATGACAAC 419
|||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 TGAAGATTCCC-ACGCACACTGGTACTCATGTTGATTCACCTGGTCACGTCTATGACAAG 419
Query 420 TACTATGATGCTGG-TTTCGATGTTGACTCGCTTGATCTTCAAGTCCTCAATGGTCTTGC 478
|| || |||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TATTACGATGCTGGCTTT-GATGTTGACTCGCTTGATCTTCAAGTCCTCAATGGTCTTGC 478
Query 479 GTTGTTGGTTGATGTTCCAAAGGATAAGAACATAACTGCCGAAGTGATGAAGTCTCTTCA 538
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 479 GTTGTTGGTTGATGTTCCAAAGGATAAGAACATTACTGCTGAAGTGATGAAATCTCTTCA 538
Query 539 TATTCCAAAAGGAGTTAGTCGTGTGCTTTTCAGAACATTGAACACTGACAGGCGTCTTAT 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CATTCCAAAAGGAGTTAGTCGTGTGCTTTTCAGAACATTGAACACTGACAGGCGTCTTAT 598
Query 599 GTTCAAGAAAGAGTTTGATACAAGCTATGTCGGATTCATGAAGGATGGTGCGCAATGGTT 658
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GTTCAAGAAAGAATTTGATACAAGCTATGTCGGATTCATGAAGGATGGTGCGCAATGGTT 658
Query 659 GGTAGACAACACAGACATCAAACTTGTTGGGATTGATTATCTATCAGTGGCTGCATATGA 718
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 659 GGTAGACAACACAGACATCAAACTTGTTGGGATTGATTATCTATCAGTAGCTGCATATGA 718
Query 719 TGATCTTATTCCGTCCCACCTAGTATTCCTAAAAGACCGGGAGACTATACTTGTGGAGGG 778
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 719 TGATCTTATTCCATCCCACCTAGTATTCCTAAAAGACCGGGAGACTATACTCGTGGAGGG 778
Query 779 ATTGAAGCTGGATGGTGTGAAGGCAGGACTCTACTCTGTCCATTGCTTACCTCTAAGACT 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTTGAAGCTGGATGGTGTGAAGGCAGGACTCTACTCTGTCCATTGCTTACCTCTAAGACT 838
Query 839 GGTTGGAGCAGAAGGATCTCCAATTCGTTGCATCCTTATCGATTGATTCTCTCC--TCTC 896
||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |
Sbjct 839 GGTTGGAGCAGAAGGGTCTCCAATTCGTTGCATCCTCATCGATTGATTCTCTCCCATCAC 898
Query 897 AAACCAGCCAAATCCGGAATTGTCTGTAATCAAAAGCTTGCGTAGCTTATGAACTCAATA 956
||||| |||||||||| ||||||| |||||||||||||||| ||||||||||||| ||||
Sbjct 899 AAACCTGCCAAATCCGAAATTGTCCGTAATCAAAAGCTTGCTTAGCTTATGAACTGAATA 958
Query 957 TCAGTTTGTGCTAGATATATGCAACCAGTATGGAGATTGAAGTAGGAAGTAATAAGAGAG 1016
|||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 959 TCAGTTTGTGCTAGATTTATGCAACCAATATGGAGATTGAAGTAGGAAGAAATAAGAGAG 1018
Query 1017 GTGCAGAGAAGACGAAGTTGAGGAGAGTGAAGCACCGAGGAAAAAAGATTTCTCATTTCT 1076
|||||||||||| ||||||| || | ||||||||||| |||||||||||| ||||||||
Sbjct 1019 ATGCAGAGAAGACCAAGTTGATGATAATGAAGCACCGAAGAAAAAAGATTTTTCATTTCT 1078
Query 1077 ATGTATATGTCAATAAATTAATTAAAAATTCTCTTAATCTGACAAAGTTGTACTCCTAAT 1136
|||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |||
Sbjct 1079 ATGTATATGTCAATAAATAAATTAAAAATTCTCTTAATCTGTCAAGGTTGTACT---AAT 1135
Query 1137 TATCAAACT-GTGATTCTACAGAAAAAGTTTATGACATATAAATCCTTGTTGAAATAGGA 1195
||||||| | | | ||||| ||| || |||||||||||||||||||||||||
Sbjct 1136 TATCAAA-TAG-G--------GAAAA-GTTCATAACATATAAATCCTTGTTGAAATAGGT 1184
Query 1196 TTTTGTTTTCCTGATCATATTCAGATTGGGTT 1227
||||||||||||||||||||||||||| ||||
Sbjct 1185 TTTTGTTTTCCTGATCATATTCAGATTTGGTT 1216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60290854545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5