BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491129
Length=739
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35210.1 | Symbols: | Arabidopsis protein of unknown functi... 691 0.0
AT4G35200.1 | Symbols: | Arabidopsis protein of unknown functi... 551 4e-156
AT2G17070.1 | Symbols: | Arabidopsis protein of unknown functi... 276 2e-73
AT2G17080.1 | Symbols: | Arabidopsis protein of unknown functi... 193 3e-48
> AT4G35210.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr4:16751224-16752239 FORWARD LENGTH=1016
Length=1016
Score = 691 bits (374), Expect = 0.0
Identities = 456/494 (92%), Gaps = 11/494 (2%)
Strand=Plus/Plus
Query 1 GACCTGAGAGCCAATGAAGACAGAACAAACATCTAAGCATTTTCTTCATCTC-AAAACAG 59
|||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 GACCGGAGAGCCATTGAAGACAGAACAAACATCTAAGCATTTTCTTCATCTCAAAAACAG 180
Query 60 AGAAATAAAGCTCAAAC--AAAAAATGACAGTCTCCTTCCATGTTCGATCTAGCAGCTAC 117
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 AGAAAGAAAGCTCAAACAAAAAAAATGGCAGTCTCCTTCCATGTTCGATCTAGCAGCTAC 240
Query 118 CCTTCAAGGCAACACCCTCAAGCCGCTCATGTCGATGAGCACTTGACCCGATTGAGATCT 177
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 241 CCTTCAAGGCAACACCCTCAAGCCGCTCATGTCGATGAGCAATTAACCCGATTGAGATCT 300
Query 178 TCTGAGACAGCTTCTTCATCTTCTATCCGTCAAAGACTTAGCAACCTTCAAGATTTACAT 237
|||| |||||||||||||||||||||| | || |||||||||||||||||||| ||||||
Sbjct 301 TCTGGGACAGCTTCTTCATCTTCTATCTGCCAGAGACTTAGCAACCTTCAAGACTTACAT 360
Query 238 GATTCTCTTGAAAAGATGATTCGCTTATCTGTCACCAACCATGCTTTATCTCAAGATCAG 297
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GATTCTCTTGAAAAGATGATTCGCTTATCTGTCACCAACCAGGCTTTATCTCAAGATCAG 420
Query 298 ATTGAGAAGTTTCTTGATGGATCCATCAAAATCTTGGATTTGTGCA--ATGTCGCCAAGG 355
||||||||| |||||||||||||||||||||||||||| | |||| || || ||||
Sbjct 421 ATTGAGAAGCTTCTTGATGGATCCATCAAAATCTTGGACCTATGCAGCATTTCT--AAGG 478
Query 356 ATGCTTTGTCACAGATGAAAGA-AGGTCTCATGGAGATCCAATCTATTCTACGAAGAAAG 414
||| |||||| || |||||||| || ||||| |||||||||||| ||| || ||||||||
Sbjct 479 ATGGTTTGTCGCAAATGAAAGAGAG-TCTCAAGGAGATCCAATCGATTGTAAGAAGAAAG 537
Query 415 CGTGGAGATCTATCTGCTGAGGTCAAGAAATACTTAGCTTCAAGAAAGTTTCTCAAGAAA 474
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 538 CGTGGAGATCTATCCGCTGAGGTCAAGAAATACTTAGCCTCAAGAAAGTTTCTCAAGAAA 597
Query 475 TCATTTC-AAAAAG 487
||||| | ||||||
Sbjct 598 TCATT-CGAAAAAG 610
Score = 374 bits (202), Expect = 8e-103
Identities = 240/258 (93%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 483 AAAAGCTTGTGGAAAATGGCCACTAGTCTCAAAGATGATGAGCCAAAGCAAAGTTACATG 542
||| ||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct 726 AAAGGCTTGTGGAAAATGGTCACTGGTCTCAAAGATGATGAGCCAAAGCAAAGGTACATG 785
Query 543 TGAAGCAGATGCAAATGAATTCACAAGAGTAGACATGGAGTTCCAATCCGAAAAGTCGTT 602
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 TGAAGCTGAAGCAAATGAATTCACAAGAGTAGACATGGAGTTCCAATCCGAAAAGTCGTT 845
Query 603 GCAGATGGAGGATGTGCAGAACTTAG-AGTCATGCATTCAAGATCTTGAAGATGGGATTG 661
|| |||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 846 ACAAATGGAGGATGTGCAGAACTTAGAAAT-ATGCATTCAAGATCTTGAAGATGGGATTG 904
Query 662 GGTCACTCTCTAAATCATTGATCAAATATAGAGTCTCAATTCTTAACATCTAATAGGTCA 721
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 905 GGTCACTCTCTAAATCATTGATCAAATACAGAGTCTCTATTCTTAACATCTAATAAATCA 964
Query 722 CTGTGCCCACGAAATTTT 739
||| ||||| |||||||
Sbjct 965 TTGTACCCAC-AAATTTT 981
> AT4G35200.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr4:16749142-16749903 REVERSE LENGTH=762
Length=762
Score = 551 bits (298), Expect = 4e-156
Identities = 374/410 (91%), Gaps = 8/410 (2%)
Strand=Plus/Plus
Query 82 ATGACAGTCTCCTTCCATGTTCGATCTAGCAGCTACCCTTCAAGGCAACACCCTCAAGCC 141
||| |||||||||||||||||||||||| |||||||||||| || |||||||||||||||
Sbjct 1 ATGGCAGTCTCCTTCCATGTTCGATCTAACAGCTACCCTTCGAGACAACACCCTCAAGCC 60
Query 142 GCTCATGTCGATGAGCACTTGACCCGATTGAGATCTTCTGAGACAGCTTCTTCATCTTCT 201
||||||||||||||||| |||||| |||||||||||||||| |||| ||||||||||||
Sbjct 61 GCTCATGTCGATGAGCAATTGACCAGATTGAGATCTTCTGATTCAGCCTCTTCATCTTCT 120
Query 202 ATCCGTCAAAGACTTAGCAACCTTCAAGATTTACATGATTCTCTTGAAAAGATGATTCGC 261
||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCTGCCAGAGACTTAGCAACCTTCAAGATTTACATGATTCTCTTGAAAAGATGATTCGC 180
Query 262 TTATCTGTCACCAACC-ATGCTTTATCTCAAGATCAGATTGAGAAGTTTCTTGATGGATC 320
|| ||||||||||||| | |||||||||||||||||||||||||| |||||||||||||
Sbjct 181 TTGTCTGTCACCAACCTA-GCTTTATCTCAAGATCAGATTGAGAAACTTCTTGATGGATC 239
Query 321 -CATCAAAATCTTGGATTTGTGCAATGTCGCCAAGGATGCT-TTGTCACAGATGAAAGAA 378
| ||| ||||| |||||||||||| | ||||||||||| || |||||||||||||||
Sbjct 240 TC-TCAGGATCTTAGATTTGTGCAATATAGCCAAGGATGCGATT-TCACAGATGAAAGAA 297
Query 379 GGTCTCATGGAGATCCAATCTATTCTACGAAGAAAGCGTGGAGATCTATCTGCTGAGGTC 438
||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||
Sbjct 298 GGTCTCATGGAGATCCAATCTATTCTACGAAGAAAGCCTGGAGATCTATCCGGAGAGGTC 357
Query 439 AAGAAATACTTAG-CTTCAAGAAAGTTTCTCAAGAAATCATTTCAAAAAG 487
||||||||||||| || |||||||||| |||||||||||| | |||||||
Sbjct 358 AAGAAATACTTAGTCT-CAAGAAAGTTCCTCAAGAAATCACTCCAAAAAG 406
Score = 318 bits (172), Expect = 4e-86
Identities = 214/234 (91%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 483 AAAAGCTTGTGGAAAATGGCCACTAGTCTCAAAGATGATGAGCCAAAGCAAAGTTACATG 542
||| |||||||| |||||| || | |||||||||||||||||||||| ||||||||||||
Sbjct 531 AAAGGCTTGTGGGAAATGGTCATTGGTCTCAAAGATGATGAGCCAAAACAAAGTTACATG 590
Query 543 TGAAGCAGATGCAAATGAATTCACAA-GAGTAGACAT-GGAGTTCCAATCCGAAAAGTCG 600
||||||||| |||||||||||||||| || | || | |||||||||||||||||||||
Sbjct 591 TGAAGCAGAAGCAAATGAATTCACAAGGA-TCGA-TTCTGAGTTCCAATCCGAAAAGTCG 648
Query 601 TTGCAGATGGAGGATGTGCAGAACTTAGAGTCATGCATTCAAGATCTTGAAGATGGGATT 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 649 TTGCAGATGGAGGATGTGCAGAACTTAGAGTCATGCATTCAAGATCTTGAAGATGGAATT 708
Query 661 GGGTCACTCTCTAAATCATTGATCAAATATAGAGTCTCAATTCTTAACATCTAA 714
| |||||||||||||||||| |||||||| ||||| ||||| ||||||||||||
Sbjct 709 GAGTCACTCTCTAAATCATTAATCAAATACAGAGTTTCAATCCTTAACATCTAA 762
> AT2G17070.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr2:7430863-7431654 REVERSE LENGTH=792
Length=792
Score = 276 bits (149), Expect = 2e-73
Identities = 341/428 (80%), Gaps = 35/428 (8%)
Strand=Plus/Plus
Query 88 GTCTCCTTCCATGTTCGATCT-AGCAGCTACCCTTCAAGGCAACACCCTCAAGCCGCTCA 146
||||||||||| ||||||||| | ||| ||||| || | | ||||| |||||||||||
Sbjct 7 GTCTCCTTCCACGTTCGATCTCA-CAGTTACCCCTCGATACCTCACCCACAAGCCGCTCA 65
Query 147 TGTCGATGAGCACTTGACCCGATTGAGATCTTCTGA-G--A---CAGCTTCTTC-A--TC 197
||| |||||||| ||| || |||| ||||||||||| | | || | ||||| | ||
Sbjct 66 TGTTGATGAGCAGTTGGCCAGATTAAGATCTTCTGAGGAAACCTCAACATCTTCAAGCTC 125
Query 198 TTCTATCCGTCAAAGACTTAG-CAACCTTCAAGATTTACATGATTCTCTTGAAAAGATGA 256
||||||| ||||||||||| | |||||||||||| ||||||| |||||||| ||| | |
Sbjct 126 TTCTATCTGTCAAAGACTT-GACAACCTTCAAGAACTACATGAGTCTCTTGACAAGCTTA 184
Query 257 TTCGCTTATCTGTCAC-CAACCATGCT-T---T-ATCTCAAGATC-----AGA--TTGAG 303
||||| || | || || ||| || ||| | | | |||| | ||| |||||
Sbjct 185 TTCGCCTACCCGTTACACAA-CAGGCTCTCGGTCAAGAGAAGAACAAGAAAGACGTTGAG 243
Query 304 -AAGTTTCTTGATGGATC-CATCAAAATCTTGGATTTGTGCAATGTCGCCAAGGATGCTT 361
|| ||||||||||||| | |||| || |||||| ||||||| | ||||||||||||
Sbjct 244 CAA-CTTCTTGATGGATCTC-TCAAGATATTGGATGTGTGCAACATATCCAAGGATGCTT 301
Query 362 TGTCACAGATGAAAGAAGGTCTCATGGAGATCCAATCTATTCTACGAAGAAAGCGTGGAG 421
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 302 TGTCGCAGATGAAAGAAGGTCTCATGGAGATCCAATCTATTCTAAGAAGAAAGCGCGGAG 361
Query 422 ATCTATCTGCTGAGGTCAAGAAATACTTAGCTTCAAGAAAGTTTCT-CAAGAA-ATCATT 479
||||||| | ||||| |||||||||||||| |||||||||| || |||||| | ||||
Sbjct 362 ATCTATCAGGAGAGGTGAAGAAATACTTAGCCTCAAGAAAGTC-CTTCAAGAAGA-CATT 419
Query 480 TCAAAAAG 487
|| ||||
Sbjct 420 CCAGAAAG 427
> AT2G17080.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr2:7433326-7434117 REVERSE LENGTH=792
Length=792
Score = 193 bits (104), Expect = 3e-48
Identities = 202/247 (82%), Gaps = 15/247 (6%)
Strand=Plus/Plus
Query 484 AAAG-CTTGTGGAAAATGGCCACTAGTCTCAAAGATGATGAGCCA-AAGCAAAGTTACAT 541
|||| ||||| | |||||| || | ||||||||| | |||| | | ||| ||||||||||
Sbjct 552 AAAGACTTGTAGTAAATGGTCAGTCGTCTCAAAGCTAATGAACAAGAAG-AAAGTTACAT 610
Query 542 GTGAAGCAG-ATGCAAATGAATTCAC-AAGAGTAGACAT-GGAGTTCCAATCCGAAAAGT 598
||||||| | | | ||| |||||||| ||| || || | || || ||||||||||||
Sbjct 611 GTGAAGC-GCAAGAAAACGAATTCACGAAG-GTTGA-TTCCGAATTTCAATCCGAAAAGA 667
Query 599 CGTTGCAGATGGAGGATGTGCAGAACTTAGAGTCATGCATTCAAGATCTTGAAGATGGGA 658
| ||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||| |
Sbjct 668 CCTTGAAGATGGATGATGTTCAGAACCTAGAGTCATGCATTCAAGATCTTGAAGATGG-A 726
Query 659 -TTGGGTCACTCTCTAAA-TCATTGATCAAATATAGAGTCTCAATTCTTAACATCTAATA 716
||| ||||| || ||| |||||||| ||||| ||||||||| |||||||||||| ||
Sbjct 727 CTTGAATCACTTTC-AAAGTCATTGATTAAATACAGAGTCTCATTTCTTAACATCT--TA 783
Query 717 GGTCACT 723
|| ||||
Sbjct 784 GGCCACT 790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35867180958
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5