BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491133
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35170.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1546 0.0
> AT4G35170.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr4:16736757-16738437
FORWARD LENGTH=1233
Length=1233
Score = 1546 bits (837), Expect = 0.0
Identities = 1014/1096 (93%), Gaps = 26/1096 (2%)
Strand=Plus/Plus
Query 1 CCAACTTCTAAAATAGAGGTCACAACAAAAATATTATAAAATTTCCAAATCAAAATCAAA 60
|||||||||||||||||| ||| ||| |||| |||| |||||||||||||||||||||||
Sbjct 1 CCAACTTCTAAAATAGAGATCATAACCAAAACATTACAAAATTTCCAAATCAAAATCAAA 60
Query 61 AGCTTAATTTATTGAGAAGGAGATGA-GAACGTGGCCGGCTAGATCTTCGCCGCAAAAGA 119
|||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| |
Sbjct 61 AGCTTAATTTATTGAGAAGGAGATGATG-ACGTGGCCGGCTAGATCATCGCCGCAAAACA 119
Query 120 CGAGGAAGCCGGTTTACGTCGTGCATAGCCCACCAAACACAGACGTAGACAAGTTATCAA 179
|||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |
Sbjct 120 CGAGGAAGCCAGTTTACGTCGTGCATAGCCCACCGAACACAGACGTAGACAAGATATCGA 179
Query 180 CCGGATCAGGTTTTAGCCCATTCGGGTCACCCCTTAACGATCAGGGTCAGGTCAGCCACT 239
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 CCGGTTCAGGTTTTAGCCCATTCGGGTCACCCCTTAACGATCAGGGTCAGGTCAGCAACT 239
Query 240 TCCGTCATGACTCGGTGGCCGAGTCATCTTCGAATCCACGATCGTCAGGACCATTGAGAA 299
| | ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 240 TTCAACATCACTCGGTGGCCGAGTCATCTTCGTATCCACGATCGTCAGGACCATTGAGAA 299
Query 300 ACGAGTACAGAAGTGTCCAAGTGCATGATCTTGACCGTCGAATC-CATAAAGATGAAGAT 358
|||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||
Sbjct 300 ACGAGTACAGCAGTGTCCAAGTGCATGATCTTGACCGTCGAA-CTCATGAAGATGAAGAT 358
Query 359 TACGATGAAATGGACGGCCCAGATGATGAGAAGAGGAGAAGGGTAATGAGGTTTTACTCG 418
||||||||||||||||| || | |||||||||||||||||| ||| |||||||||||||
Sbjct 359 TACGATGAAATGGACGGTCC-G--GATGAGAAGAGGAGAAGGATAACGAGGTTTTACTCG 415
Query 419 TTCTTGTTGTTTACGTTGGTGTTGGCCTTCACTCTCTTTTGTCTCATTTTGTGGGGAGTT 478
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 416 TGCTTGTTGTTTACGTTGGTGTTGGCCTTCACTCTCTTCTGTCTCATTTTGTGGGGAGTT 475
Query 479 TCCAAATCTTTCTCACCTATTGTCACTTTGAAGGAGATGGTATTGGAGAGCTTGAACGTG 538
|||||||||||| ||||||||| |||||||||||| ||||||||||||| |||||| |||
Sbjct 476 TCCAAATCTTTCGCACCTATTGCCACTTTGAAGGAAATGGTATTGGAGAACTTGAATGTG 535
Query 539 CAGTCCGGGAACGACCAATCGGGAGTAG-TCACAGATATGCTAACCCTAAATTCAACGGT 597
|||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct 536 CAGTCCGGGAACGACCAATCGGGAGT-GCTCACAGATATGCTAACTCTAAATTCAACGGT 594
Query 598 CAGGATCTTATATAGAAACCCCGCAACTTTTTTCACTGTCCACGTCACCTCCTCTCCCCT 657
|||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 595 CAGGATCTTATACAGAAACCCCGCAACTTTCTTCACTGTCCACGTCACCTCCGCTCCCCT 654
Query 658 CCAGCTCAGCTATTCCCAGCTCATCCTCGCGTCCGGTCAGATGGAAAAGTTCTCTCAACG 717
||||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||||
Sbjct 655 CCAGCTCAGCTATTCCCAGCTTATCCTCGCATCCGGTCAGATGGGAGAGTTCTCTCAACG 714
Query 718 AAGGAAAAGCGAGAGAATCATTGAGACCAAAGT-TTTAGGGAATCAAATTCCTCTGTACG 776
||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |
Sbjct 715 AAGGAAAAGCGAGAGAATCATTGAGACCAAAGTATTT-GGGGATCAAATTCCTCTGTATG 773
Query 777 GAGGCATACCGGCTCT-TTACGCCCAACGAGCTGAACCGGACCAAGTCGTTTTGCCTCTT 835
||||| |||||||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct 774 GAGGCGTACCGGCTCTGTT-TGGCCAACGAGCTGAACCGGACCAAGTCGTTTTGCCTCTT 832
Query 836 AATCTGACATTCACGTTACAG-GCTCGAGCCTATGTGCTCGGCCGATTGGTCAAGACTAA 894
|| ||||| || ||||| | | || ||||||||||||||||| ||||||||||||||||
Sbjct 833 AACCTGACTTTTACGTTGC-GAGCACGAGCCTATGTGCTCGGACGATTGGTCAAGACTAC 891
Query 895 GTGT-CACTCGAATATCAAATGCAGCATCACTTTTTATGGCGATAAACTTGGCAAGACAC 953
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GT-TCCACTCGAATATCAAATGCAGCATCACTTTTTATGGCGATAAACTTGGCAAGACAC 950
Query 954 TTGATCTCTCCAAGTCTTGTTCTGATCATTGACCAAAATGAACAGCATCATGATCTGTTC 1013
|||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| |
Sbjct 951 TTGATCTCTCCAAGTCCTGTTCTGATCATTGATCAAAATGAACAGCATAATGAT--G--- 1005
Query 1014 TGATTTAGAGAAGATTATATTATTTCATGATTTAATCGGTGAGATATACATGTAAAGAGG 1073
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1006 --ATTTAGAGAAGATTAAATTATTTCATGACTTAATCGGTGAGATATACATGTAAAGAGG 1063
Query 1074 GACG-AAATTGTTTTA 1088
|| | |||| ||||||
Sbjct 1064 GATGGAAAT-GTTTTA 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56274810945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5