BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491137
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35150.1 | Symbols: | O-methyltransferase family protein | ... 833 0.0
AT4G35160.1 | Symbols: | O-methyltransferase family protein | ... 739 0.0
> AT4G35150.1 | Symbols: | O-methyltransferase family protein
| chr4:16726948-16728531 REVERSE LENGTH=978
Length=978
Score = 833 bits (451), Expect = 0.0
Identities = 506/533 (95%), Gaps = 1/533 (0%)
Strand=Plus/Plus
Query 325 TGT-GCGGGAGCTTGTCACGGCTTGTTTGACGGCGTGGCTACGGTGGTTGACGTAGGAGG 383
||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TGTAGCTGGAGCTTGTCAAGGCTTGTTTGACGGCGTGGCTACGGTGGTTGACGTAGGAGG 485
Query 384 AGGTACGGGAGATACGATGGGGATACTTGTGAAGGAGTTTCCTTGGATCAAAGGATTCAA 443
|||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 486 AGGTACCGGAGAGACGATGGGAATACTTGTAAAGGAGTTTCCTTGGATCAAAGGATTTAA 545
Query 444 CTTTGATCTTCCTCATGTTATTGAAGTTGCTCAAGTCTTGGACGGTGTTGAGAATGTTGA 503
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 CTTTGACCTTCCTCATGTTATTGAAGTTGCTCAAGTCTTGGACGGTGTTGAGAATGTTGA 605
Query 504 GGGCGATATGTTTGATTCTATTCCCGCATGCGACGCTGTTATCATCAAGTGGGTGTTACA 563
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 606 GGGCGATATGTTTGATTCTATTCCGGCAAGCGACGCTGTTATCATCAAGTGGGTGTTACA 665
Query 564 CGACTGGGGAGACAAAGATTGCATAAAGATATTGAAGAATTGCAAAGAAGCTGTCCCACC 623
||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 666 CGATTGGGGAGACAAAGATTGCATAAAGATATTGAAGAATTGCAAAGAAGCTGTTCTACC 725
Query 624 AAATGTCGGCAAACTGTTGATAGTGGAGTGTGTTATCGGAGAGAAGAAAAATACTATGGT 683
|||| |||||||| ||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 726 AAATATCGGCAAAGTGTTGATAGTGGAGTGTGTTATCGGAGAGAAGAAAAACACGATGAT 785
Query 684 AGTAGAAGAAAGAGATGACAAGTTAGAGCACGTGAGATTGCAGCTTGACATGGTGATGAT 743
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 AGCGGAAGAAAGAGATGACAAGTTAGAGCACGTGAGATTGCAGCTTGACATGGTGATGAT 845
Query 744 GGTTCACACAAGCACAGGGAAAGAACGAACTTTGAAAGAATGGGACTTTGTTCTTAAAGA 803
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 846 GGTTCACACAAGCACAGGCAAAGAACGAACTTTGAAAGAATGGGACTTTGTTCTTACAGA 905
Query 804 AGCTGGCTTTGCTCGATATGAGGTTCGGGACATTGATGATATTCAGTCTCTTA 856
||||||||||||||||||||||||| | ||| |||||||| ||||||||||||
Sbjct 906 AGCTGGCTTTGCTCGATATGAGGTTAGAGACTTTGATGATGTTCAGTCTCTTA 958
Score = 355 bits (192), Expect = 4e-97
Identities = 204/210 (97%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 54 GTGTGCCATTGATCTTAAAATACCAGAAGCCATTGAAAACCATCCTTCGTCACAGCCCGT 113
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 GTGTGCCATTGATCTCAAAATACCAGAAGCCATTGAAAACCATCCTTCGTCACAGCCCGT 158
Query 114 GACACTAACCGAACGCTCCTCTGCCGTCTCTGCTTCTCCTTCACATCTCCGCCGTATAAT 173
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 GACACTATCCGAACTCTCCTCTGCCGTCTCTGCTTCTCCTTCACATCTCCGCCGTATAAT 218
Query 174 GAGGTTTCTTGTGCACCAAGGACTCTTCAAAGAAGTCCCCACAAAAGATGGTTTAGCCAC 233
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 GCGGTTTCTTGTGCACCAAGGACTCTTCAAAGAAGTCCCCACAAAAGATGGTTTAGCCAC 278
Query 234 AGGATACACTAACACGCCACTCTCTCGCCG 263
|| ||||||||||||||||||||||||||
Sbjct 279 TGGCTACACTAACACGCCACTCTCTCGCCG 308
> AT4G35160.1 | Symbols: | O-methyltransferase family protein
| chr4:16730760-16732811 REVERSE LENGTH=1381
Length=1381
Score = 739 bits (400), Expect = 0.0
Identities = 491/535 (92%), Gaps = 5/535 (1%)
Strand=Plus/Plus
Query 325 TGT-GCGGGAGCTTGTCACGGCTTGTTTGACGGCGTGGCTACGGTGGTTGACGTAGGAGG 383
||| || ||||||||||||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 600 TGTAGCCGGAGCTTGTCACGGCTTGTTTGATGGCGTGACTACGATGGTTGACGTAGGAGG 659
Query 384 AGGTACGGGAGATACGATGGGGATACTTGTGAAGGAGTTTCCTTGGATCAAAGGATTCAA 443
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 660 TGGTACGGGAGAGACGATGGGGATGCTTGTGAAGGAGTTTCCTTGGATCAAAGGATTTAA 719
Query 444 CTTTGATCTTCCTCATGTTATTGAAGTTGCTCAAGTCTTGGACGGTGTTGAGAATGTTGA 503
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 720 CTTTGATCTTCCTCATGTCATTGAAGTTGCTGAAGTCTTGGACGGTGTTGAGAATGTTGA 779
Query 504 GGGCGATATGTTTGATTCTATTCCCGCATGCGACGCTGTTATCATCAAGTGGGTGTTACA 563
|||||||||||||||||||||||| || |||||||| || |||||||||||||||||||
Sbjct 780 GGGCGATATGTTTGATTCTATTCCGGCTTGCGACGCCATTTTCATCAAGTGGGTGTTACA 839
Query 564 CGACTGGGGAGACAAAGATTGCATAAAGATATTGAAGAATTGCAAAGAAGCTGTCCCACC 623
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 840 CGATTGGGGAGACAAAGATTGCATAAAGATATTGAAGAATTGCAAAGAAGCGGTCCCTCC 899
Query 624 AAATGTCGGCAAACTGTTGATAGTGGAGT-GTGTTATCGGAGAGAAGAAAAATACTATGG 682
|||| |||| ||| ||||||||||||| | | || ||||||||||| ||||| || |||
Sbjct 900 AAATATCGGAAAAGTGTTGATAGTGGAATCG-GTGATCGGAGAGAATAAAAAGACGATGA 958
Query 683 TAGTAGAAGAAAGAGATGACAAGTTAGAGCACGTGAGATTGCA-GCTTGACATGGTGATG 741
|||| || ||| ||||||| ||||||||||||||||||||| | |||||| |||||||||
Sbjct 959 TAGTGGACGAACGAGATGAAAAGTTAGAGCACGTGAGATTG-ATGCTTGATATGGTGATG 1017
Query 742 ATGGTTCACACAAGCACAGGGAAAGAACGAACTTTGAAAGAATGGGACTTTGTTCTTAAA 801
|||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1018 ATGGCTCACACAAGCACAGGCAAAGAACGGACTTTGAAAGAATGGGACTTTGTTCTTAAA 1077
Query 802 GAAGCTGGCTTTGCTCGATATGAGGTTCGGGACATTGATGATATTCAGTCTCTTA 856
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1078 GAAGCTGGCTTTGCTCGATATGAGGTTAGGGACATTGATGATGTTCAGAGTCTTA 1132
Score = 289 bits (156), Expect = 4e-77
Identities = 192/210 (91%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 54 GTGTGCCATTGATCTTAAAATACCAGAAGCCATTGAAAACCATCCTTCGTCACAGCCCGT 113
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 144 GTGTGCCATTGATCTTAAAATACCAGAAGCCATTGAAAACCATCCTTCTTCACAGCCCGT 203
Query 114 GACACTAACCGAACGCTCCTCTGCCGTCTCTGCTTCTCCTTCACATCTCCGCCGTATAAT 173
|||||| |||||| |||||| |||||||| || ||||| || |||||||||||||||||
Sbjct 204 AACACTAGCCGAACTCTCCTCCGCCGTCTCCGCCTCTCCCTCGCATCTCCGCCGTATAAT 263
Query 174 GAGGTTTCTTGTGCACCAAGGACTCTTCAAAGAAGTCCCCACAAAAGATGGTTTAGCCAC 233
|||||||||||| ||||||||| |||| |||||| |||||||||||||||||||||| ||
Sbjct 264 GAGGTTTCTTGTACACCAAGGAATCTTTAAAGAAATCCCCACAAAAGATGGTTTAGCTAC 323
Query 234 AGGATACACTAACACGCCACTCTCTCGCCG 263
||| ||| ||| |||||||||||||||||
Sbjct 324 AGGCTACGTTAATACGCCACTCTCTCGCCG 353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41945512745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5