BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491138
Length=1739
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35140.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2608 0.0
> AT4G35140.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:16723714-16726636 REVERSE LENGTH=1809
Length=1809
Score = 2608 bits (1412), Expect = 0.0
Identities = 1643/1752 (94%), Gaps = 26/1752 (1%)
Strand=Plus/Plus
Query 1 CTTCTTCTTCTCTCTCTGGGACCTCCGAAGTAGTAATTTCACGGCGAGATACAGAGCAAT 60
|||| |||||||||| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 30 CTTCGTCTTCTCTCTGTGGGACTTCTGAAGTAGTAATTTCACGGCGAGATACAGAGCAAT 89
Query 61 TAGAGAATATTCTCTCTGGTCTATAGCTTCATCAACCGTGAAAAACTTTCTCC-AAT-TA 118
|||||||| |||||||||||| || | | ||||||||||||||||||| | | ||
Sbjct 90 TAGAGAATCTTCTCTCTGGTC--TA---T--T--ACCGTGAAAAACTTTCTCCTATTATA 140
Query 119 CCGTTGATTTCATAGGAAGATGAGTGAGAAAGCGAAGAAAGGTCGATTAAA-TTTCAACG 177
|| ||||||||||||||||||||||||||||| || |||||||| ||| ||| || |
Sbjct 141 AATTTTATTTCATAGGAAGATGAGTGAGAAAGCGAGGAGAGGTCGATCAAACTTT-AATG 199
Query 178 GATTACATCACCCTGTTGTTGATTTCTGGCGACGAGAGGTCGGTGGAATCTCCTCTCGTA 237
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 200 GACTACATCACCCTGTTGTTGATTTTTGGCGACGAGAGGTCGGTGGAATCTCCTCTCGTA 259
Query 238 ATTTCTCCAATCGCTTCTCCGCCTCCGAGAATTTGGTTCTGCGTCTAGAGATATACAAGA 297
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 260 ATTTCTCCAATCGCTTCTCCGCCTCCGAGAATTTGGTTCTGCGTTTAGAGATATACAAGA 319
Query 298 AGCTTGAGAAGCACAAAGGGTGTGTAAACACAGTGAGTTTCAATGCAGAAGGAGATGTTC 357
|||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 320 AGCTAGAGAAGCACAAAGGGTGTGTAAACACCGTGAGTTTCAATGCCGAAGGAGATGTTC 379
Query 358 TGATTTCGGGTTCCGATGATCGGCGTGTCGTTCTTTGGGATTGGCAACTTGGGAATGTTA 417
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 380 TGATATCTGGTTCCGATGATCGGCGTGTCGTTCTTTGGGATTGGCAACTTGGGAATGTGA 439
Query 418 AGCTTTCCTTCCATTCAGGACACGCTAATAACGTATTTCAAGCAAAGTTTATGCCTTTCT 477
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 440 AGCTTTCCTTCCATTCAGGACACGCTAATAACGTTTTTCAAGCAAAGTTTATGCCTTTCT 499
Query 478 CTGATGATCGAACCATTGTTACCTGTGCTGCTGATGGAATGGTTCGGCGTGCAAGTATTC 537
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 500 CTGATGATCGAACGATAGTAACCTGTGCTGCTGATGGAATGGTTCGGCGTGCAAGTATTC 559
Query 538 TTGAGGGTGATAAAGTTGAGACGTCTTTCTTGGGATTGCATCAAGGAAGAGCTCATAAGC 597
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
Sbjct 560 TTGAGGGTGATAAAGTGGAGACGTCTTTCTTGGGATTGCATCAAGGACGAGCTCATAAAC 619
Query 598 TATGTATAGAGCCAGGAAACCCACATATATTTTATACATGTGGTGAAGATGGATTAGTAC 657
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 620 TATGTATAGAGCCAGGAAACCCACATATATTTTACACATGTGGTGAAGATGGATTAGTAC 679
Query 658 AACGATTTGATCTAAGGACTGAAGCCCCTACAGAACTTTTCACTTGTCAATCAGTTGATC 717
|||| |||||||| |||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 680 AACGTTTTGATCTGAGGACTGAAGCCCCTACAGAACTTTTCACTTGCCGATCAGTTGATC 739
Query 718 CTAGGAGGAGGAACATGGAAGCCATCCAGCTAAACGCTATTGCGATTGACCCGAGAAATT 777
||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||||
Sbjct 740 CTAGGAGGAGGAACATGGACGCCATCCAGCTAAATGCGATTGCGATCGACCCGAGAAATT 799
Query 778 CTAACCTCTTTGCTATTGGGGGAATGGACGAGTACGCTCGTCTTTATGATGTCCGTAGAT 837
|||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 800 CTAACCTCTTTGCTGTTGGGGGAATGGAAGAGTACGCTCGTCTTTATGATATCCGTAGAT 859
Query 838 TTCAGGGTGACAGTTCAAATGGTTTTACCCGAGCCGCAGATCACTTTTGCCCTCCACATC 897
|||||||||| ||| |||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 860 TTCAGGGTGAGGGTTTAAATGGTTTTACCCGAGCTGCAGATCACTTTTGTCCTCCACATC 919
Query 898 TTATTGGCAATGAAGAAGTTGGAATAACGGGTTTGGCTTTCTCAGAGCAAAGCGAGCTTC 957
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 920 TTATTGGCAATGAAGATGTTGGAATAACGGGGTTGGCTTTCTCAGAGCAAAGCGAGCTTC 979
Query 958 TTATTTCGTACAATGATGAATTCATCTATCTTTTCACACCCGATATGGGATTAGGGTCTA 1017
|| |||| ||||||||||| ||||||||||| |||||||||| |||||||||||||||||
Sbjct 980 TTGTTTCATACAATGATGAGTTCATCTATCTCTTCACACCCGGTATGGGATTAGGGTCTA 1039
Query 1018 CCCCTATCCCATCCTCCCCGATATCCAAGAGTAGTGTCA-CGAAATCAGAATCAGCTTCT 1076
||||||||||||||||||||||||||||||| ||| | | |||||||||||| |||||
Sbjct 1040 ACCCTATCCCATCCTCCCCGATATCCAAGAGTCCTGT-ATCAAAATCAGAATCATCTTCT 1098
Query 1077 TCCCCAAAAGATGAGAACGAACACTCAGTTCCTTTGGTTTATAAGGGGCACAAGAACTGT 1136
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1099 TCCCCAAAAGATGAGAACGAACACTCAGTTTCTTTGGTTTATAAGGGGCACAAGAACTGT 1158
Query 1137 GAGACGGTTAAGGGTGTGAAtttttttGGACCTCGGTCTGAATATGTGGTTAGTGGGTCA 1196
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1159 GAGACAGTTAAGGGTGTGAACTTTTTTGGACCTCGGTCTGAATATGTGGTTAGTGGGTCA 1218
Query 1197 GACTGTGGGCGGATATTTATTTGGAGGAAAAAAGGTGGGGAGCTTATCCGTGTTATGGAA 1256
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1219 GACTGTGGGAGGATATTTATTTGGAGGAAAAAGGGTGGGGAGCTTATCCGTGTTATGGAA 1278
Query 1257 GCAGATAGGCATGTGGTTAACTGTATTGAGCCTCATCCGCATATTCCTGTGCTTGCTAGC 1316
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1279 GCAGATAGGCATGTAGTTAACTGTATTGAGCCTCATCCACATATTCCTGTGCTTGCTAGC 1338
Query 1317 AGTGGAATTGAAAGTGACATCAAGGTGTGGACGTCAAAGGCAGCTGAGAGAGCTACGTTA 1376
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1339 AGTGGAATTGAAAGTGACATTAAGGTGTGGACGTCAAAGGCAGCTGAGAGAGCTACGTTA 1398
Query 1377 CCTGAAAACATCGAACTGCGCAAGCGAACGCCTAGGGGATGGATGTACCGTGTCTCTTCA 1436
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1399 CCTGAAAACATCGAACTGCGCAAGCGAACGCCTAGGGGATGGATGTATCGTGTCTCTTCA 1458
Query 1437 CCGCAGGAACTATTGGCACAACTCTTCTCGCTGCAAAGCCGGAGCAGTAGTAGCCCAGAG 1496
||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct 1459 CCGCATGAACTATTGGCGCAACTCTTCTCGCTGCAAAACCGAAGCAGTAGTAGTCCAGAG 1518
Query 1497 AGAGAAGGAGAATCATCTTCAGCCACTGGAAGAGAACTTCTTGATCTTATTCTTACCTTC 1556
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1519 AGAGAAGGAGAATCTTCTTCAGCCACTGGAAGAGAACTTCTTGATCTTATCCTCACCTTC 1578
Query 1557 AATGATCAGAGCGA---TGA---TGCAACTGATGATGAAGATGGTAATAGCCATGAAGAC 1610
|||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1579 AATGATCAGAGCGACGATGAAAATGCAACTGATGATGATGATGGTAATAGCCATGAAGAC 1638
Query 1611 TTCTTCTCTTGAA-AGAAAACTC-C-TCTAAAAGAATTTGTAAATAATTTTTCAGTCCCT 1667
|||||||||| || ||||||| | | ||| ||||||||||||||| |||||||||||||
Sbjct 1639 TTCTTCTCTT-AAGAGAAAACACTCATCTGGAAGAATTTGTAAATA-TTTTTCAGTCCCT 1696
Query 1668 TTAAAACCCTTTATGTATTTTGATTTACCACATGGTTTTTCATTGTTCAATTAAGTCTCA 1727
|||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1697 TTAAAACCTTTTTTGTATTTTGATTTACCACATGGTTTTTCATTGTTCAATAAAGTCTCA 1756
Query 1728 ACATTATATGTT 1739
||||||||||||
Sbjct 1757 ACATTATATGTT 1768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85993533585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5