BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491149
Length=1342
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35070.1 | Symbols: | SBP (S-ribonuclease binding protein) ... 1550 0.0
> AT4G35070.1 | Symbols: | SBP (S-ribonuclease binding protein)
family protein | chr4:16694170-16695698 FORWARD LENGTH=1427
Length=1427
Score = 1550 bits (839), Expect = 0.0
Identities = 1050/1146 (92%), Gaps = 37/1146 (3%)
Strand=Plus/Plus
Query 227 TCCTTCTCTGTTTTTGAGCGGGGGATTAAAGAGATGGCTATACAAGCGCAGTTGAATTAC 286
|||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 286 TCCTTCTCTGTTTTCGAGCGGGAAATTCTGGAGATGGCTATACAAGCGCAGTTGAATTAC 345
Query 287 AACGCTTCGAATGCGAATCAAATTGGTTTTGGTGGGTCGGAGTTTTCTTTGATCAACAAC 346
|||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 346 AACGCTCCGAATGCGAATCAAATCGGTTTTGGTGGGTCCGAGTTTTCTTTGATCAACAAC 405
Query 347 AATGGCGTTATCGGAATCGGAAACGATCAGTCTTATCATCATGTCAATAATCTCCACTCG 406
|||||||||||||||||||| |||||||||||||||| | ||||||||||||||| | |
Sbjct 406 AATGGCGTTATCGGAATCGGTAACGATCAGTCTTATC-T--TGTCAATAATCTCCAGTTG 462
Query 407 CAGAAAGATTTCAACCAACAAGCTCTGTTTCATCATCAACACCAACAACAACAACAGTTT 466
|||||||||||||||||||| ||||||||||||||||| || || ||||||||||||| |
Sbjct 463 CAGAAAGATTTCAACCAACATGCTCTGTTTCATCATCAGCATCATCAACAACAACAGTCT 522
Query 467 CGTTCTCAGAGCTTTTTAGCTGCTCACATGGAGAAACAGAAGCAAGAGATCGATCAGTTC 526
| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 523 CCTTCTCAAAGCTTTTTAGCTGCTCAGATGGAGAAACAGAAGCAAGAGATCGATCAGTTC 582
Query 527 ATCAAGATACAGAACGAGAGGTTGAGATATGTGTTGCAAGAACAGAGGAAGCAAGAAATG 586
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 583 ATCAAAATACAGAACGAGAGGTTGAGATATGTGTTGCAAGAACAGAGGAAGCGAGAAATG 642
Query 587 GAGATGATCTTGA-GGAAAATGGAGAGTAAAGCTTTGGTTTTGATGAATCAGAAGGAAGA 645
|||||||| || | ||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 643 GAGATGAT-TTTACGGAAAATGGAGAGTAAAGCTTTGCTTTTGATGAGTCAGAAGGAAGA 701
Query 646 AGAAATGTCAAAAGCATTGAGCAAGAACATGGAACTCGAAGATCTGTTGAGAAAAATGGA 705
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 702 AGAAATGTCGAAAGCATTGAACAAGAACATGGAACTCGAAGATCTGTTGAGAAAAATGGA 761
Query 706 AATGGAGAATCAAACGTGGCAGAGAATGGCTCGTGAGAACGAAGCAATGGTGCAAACGCT 765
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 762 AATGGAGAATCAGACGTGGCAGAGAATGGCTCGTGAGAACGAAGCAATTGTGCAAACGCT 821
Query 766 TAACTCAACTCTCGGACAGGTTCGTGAAAGAGCCGCCACGTGTTACGACGCTGGGGATAC 825
|||| |||| |||| ||||||||| || |||||||||||||||||||||||||| || |
Sbjct 822 TAACACAACGCTCGAACAGGTTCGCGAGAGAGCCGCCACGTGTTACGACGCTGGTGAGGC 881
Query 826 GGAGGTGGAGGACGAAGGGTCGTTTTGCGGCGGAGAAGGGGACGGGAATAGTTTTCCGGC 885
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 882 AGAGGTGGAGGACGAAGGGTCGTTTTGCGGCGGAGAAGGAGACGGGAATAGTTTGCCGGC 941
Query 886 GAAG-A-A-GAAGATTAGTAGTTGTTGCTGCAATTGTGGGTCTAACGGAGTGACGAGAGT 942
|||| | | |||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 942 GAAGAAGATGAAGATGAGTAGTTGTTGCTGCAATTGTGGGTCTAACGGAGTAACGAGAGT 1001
Query 943 TCTGTTTCTGCCGTGTAGGCATCTCTGTTGCTGCATGGATTGCGAGGAAGGTCTTGTTCT 1002
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1002 TCTGTTTCTGCCGTGTAGGCATCTCTGTTGCTGCATGGATTGCGAGGAAGGGCTTCTTCT 1061
Query 1003 TTGTCCGATCTGTAATACCCCCAAGAAGAA-CAGAATCGAGGCCTTTATTTTCTAGGAAA 1061
||||||||||||||||||||||||||| || ||||||||||||| | |||||||||| ||
Sbjct 1062 TTGTCCGATCTGTAATACCCCCAAGAA-AAGCAGAATCGAGGCCCTCATTTTCTAGGGAA 1120
Query 1062 AATCCTTTCTTTTCTCTCCTCCGGAAAAATGCTTGGTTTTGTATTCCGGTGAACGGAGAG 1121
|||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||
Sbjct 1121 AATCCTTTCTTTTCTCTCA-CCGGAAAAATGCTTGCCTTTGTGTTCCGGTGAACGGAGAG 1179
Query 1122 TTTTTACTCCGG-TAGATGACGTGGCAGGGTTATTTGGTAAA--TAGGGGAG-AA-GGAA 1176
|||||||||||| |||||||||||||||||| |||||||||| |||||||| || ||||
Sbjct 1180 TTTTTACTCCGGGTAGATGACGTGGCAGGGTAATTTGGTAAAAATAGGGGAGGAAAGGAA 1239
Query 1177 AGTGAGATTAGGAAAAGGTTAGAAATAGGAAAAAGGTTATCTCAAGAAGTAAATTCTGAT 1236
||||||| |||| ||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1240 AGTGAGAATAGGGAAAGGTTAGAAATAGTAAAA-GGTTATCTCAAGAAGTAAATTCTGAT 1298
Query 1237 TAGGGttttcgttttcc-ttttt-t-----g-t-ctttt----------G-AGaaaaaaa 1276
|||||||||| |||||| ||||| | | | ||||| | |||||||||
Sbjct 1299 TAGGGTTTTCATTTTCCCTTTTTGTTTTTTGGTTCTTTTTCCATTCAATGGAGAAAAAAA 1358
Query 1277 aGAAACCCAGCTGGATTTGATGAACATAATTCATATTTTCCTTTTATCTAATGAATATTC 1336
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1359 AGGAACCCAGCTGGATTTGATGAACATAATTCATATTTTCCTTCTATCTAATGAATTTTC 1418
Query 1337 GGATAT 1342
||||||
Sbjct 1419 GGATAT 1424
Score = 315 bits (170), Expect = 1e-84
Identities = 219/241 (91%), Gaps = 9/241 (4%)
Strand=Plus/Plus
Query 1 CCTCTCCTATTCAACTTTTTCAGTTACTTTACTCCGTTCATCTTT-ATTTT-CTTTTTCT 58
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 4 CCTCTCCTATTCAACTTTTTCAGTTACTTTACTCCGTTCATCTTTTATTTTTCTTTT-CG 62
Query 59 TCGATTCTCATCAATACTACAAAAATCGACAGATAAATATAT--TGCAGAGAGGTTACAT 116
|||||||||||||||||||||||||| | | | |||||| ||||||| | ||||||
Sbjct 63 TCGATTCTCATCAATACTACAAAAATATATACTTCTATATATCGTGCAGAG-G-TTACAT 120
Query 117 GCATTGTACAAGTTTATT-TCCCGAGAGACAAGCGGATCAGAGACAAAATCAGAGTCGGT 175
||||||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 GCATTGTACAATTTTGTTGTCCCGAGAAACAAGCGGATCAGAGACAAAATCAGAGTCGGT 180
Query 176 TTCTTGCTTTTTGATTCCTCTTTATTAATCAGCAAAGATCGATTCCACATCTCCT-TCTC 234
||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 181 TTCCTGCTTTTTGATTCCTCTTTATTAATCAGCAAAGATCGATTCCACTTCTCCTCTCTC 240
Query 235 T 235
|
Sbjct 241 T 241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66063917220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5