BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491154
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35030.3 | Symbols: | Protein kinase superfamily protein | ... 1762 0.0
AT2G16750.1 | Symbols: | Protein kinase protein with adenine n... 152 9e-36
> AT4G35030.3 | Symbols: | Protein kinase superfamily protein
| chr4:16675702-16678206 FORWARD LENGTH=1727
Length=1727
Score = 1762 bits (954), Expect = 0.0
Identities = 1067/1121 (95%), Gaps = 10/1121 (1%)
Strand=Plus/Plus
Query 1 ATGGTTGAAGAAAAGAGGAAAATTTCAGGAAGATCGGTTTCGCTTCCATCGATAGACATA 60
|||| |||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||
Sbjct 137 ATGGGTGAAGAAAAGAGGAGAATTTCAGGAAGATCAGTTTCACTTCCATCGATAGACATA 196
Query 61 TTATTAGACGAGAAACCAGGTTGGCCTTTTCTTAAAAGAGCAACTTTAGGGACA-C-C-A 117
||| |||||||||||||||||||||| |||||||||||||||| |||||||||| | | |
Sbjct 197 TTACTAGACGAGAAACCAGGTTGGCCATTTCTTAAAAGAGCAAGTTTAGGGACACCACAA 256
Query 118 CAAGTTCACCAATGGCACACACGAAAAGTCTCAGTGGTCAATTGGGTCATGAGCTTACCT 177
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 CAAGTTCACAAATGGCACACACGAAAAGTCTCAGTGGTCAATTGGGTCATGAGCTTACCT 316
Query 178 GAACGGTTTCCACGTCATCATCATCAGACTCTAAACTATGAGACAAGCTTGATCAAGAAA 237
|||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 317 GAACGGTTTCCA---AATCATCAACAGACTCTAAACTATGAGACAAGCTTGATAAAGAAA 373
Query 238 CAAATCAAGGACATTTTGAGAGACAACAAAAAATGGTTCAAGTACAATGTTCTTAAGAAA 297
|||||||||||||| ||||||||||| || ||||||||||| ||||||||||||| ||||
Sbjct 374 CAAATCAAGGACATATTGAGAGACAATAACAAATGGTTCAACTACAATGTTCTTAGGAAA 433
Query 298 GCAACATCAGATTTCTCTCAAGAGAATGTGATTGGGAAAGGAGGATGCAACGAAGTGTAC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GCAACATCAGATTTCTCTCAAGAGAATGTGATTGGGAAAGGAGGATGCAACGAAGTGTAC 493
Query 358 AGAGGGATTCTTGAAGATGGAAAAGGCATCGCAGTGAAAATCTTGAAGTCATCATCTAAA 417
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 494 CGAGGGATTCTTGAAGATGGAAAAGGCATTGCAGTGAAAATCTTGAAGTCATCATCTAAA 553
Query 418 GAAGCTATGACAAATTTTGTTCATGAAATCAATATTATCTCTTCTTTGAGTCACCAAAAC 477
||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 554 GAAGCAATGACAAATTTCGTTCATGAAATCAACATTATCTCTTCTTTGAGTCACCAAAAC 613
Query 478 ATCTCACCGTTACTTGGTGTTTGTGTCCAAGAAAATGAACTAATCTCCGTTTACAATCTT 537
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 614 ATCTCACCGTTACTTGGTGTTTGTGTCCAAGACAATGAACTAATCTCCGTTTACAATCTT 673
Query 538 TCAACCACGGGAAGTTTAGAGGAAACCCTTCACGGTAAGCGAAAGGGAAAGTATGTATTA 597
|||| ||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 674 TCAAACACAGGAAGTTTAGAAGAAACCCTTCACGGTAAGCAAAAGGGAAAGTATGTATTA 733
Query 598 TCATGGGAAGAGAGATTCAAGATAGCTATCGGATTGGTAGAAGCGTTAGACTATCTTCAT 657
|||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct 734 TCATGGGAAGAGAGATTCAAGATAGCTATCGGGTTGGCGGAAGCATTAGACTATCTTCAT 793
Query 658 AACCGATGTTCTAAGCCAGTGATTCATAGAGATGTCAAAACTTCTAACGTTCTTCTATCA 717
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 794 AACCGATGTTCTAAGCCAGTGATTCATAGAGATGTCAAAACTTCTAACGTCCTTCTATCA 853
Query 718 GC-TGAGCTCCAACCTCAGCTGTCAGATTTTGGTCTGTCGATGTGGGGACCGACAACATC 776
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 -CTTGAGCTCCAACCTCAGCTGTCAGATTTTGGTCTGTCGATGTGGGGACCGACAACATC 912
Query 777 GTCTCGATATTCGATACAAGGTGATGTGGTGGGAACGTTTGGATATCTTGCACCGGAGTA 836
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 913 TTCTCGATATTCGATACAAGGTGATGTGGTGGGAACATTTGGATATCTTGCACCGGAGTA 972
Query 837 CTTCATGTACGGAAAAGTCAGTGATAAAGTCGATGTTTACGCCTTTGGAGTGGTTCTGCT 896
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 973 CTTCATGTATGGAAAAGTCAGTGATAAAGTTGATGTTTACGCCTTTGGAGTGGTTCTGCT 1032
Query 897 TGAACTCATATCTGGAAGACATCCTATTTCACCTCAGAATCCTAGAGGACAAGAGAGTTT 956
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 TGAACTCATTTCTGGAAGAAATCCTATTTCACCTCAGAATCCTAGAGGACAAGAGAGTTT 1092
Query 957 GGTCATGTGGGCAAAGCCTTTGATTGATAGCGGAAATGTAAAAAG-GCTTTTGGATCCAG 1015
||| ||||||||||||||||||||||||| ||||||| | ||||| || ||||||||||
Sbjct 1093 GGTAATGTGGGCAAAGCCTTTGATTGATACCGGAAAT-TTAAAAGTACTGTTGGATCCAG 1151
Query 1016 ACGTTACAGATATATTCGACGAGTCTCAGTTTCAAAGAATGGTACTTGCTGCTTCACATT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 ACGTTACAGATATATTCGACGAGTCTCAGTTTCAAAGAATGGTACTTGCTGCTTCACATT 1211
Query 1076 GCCTCACAAGATCCGCCACACATCGTCCCAATATCAGACAA 1116
||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1212 GCCTCACAAGATCAGCCACACATCGTCCCAATATAAGACAA 1252
Score = 401 bits (217), Expect = 8e-111
Identities = 237/247 (96%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 1188 ATACTGAGGCTACTAAGAGATGAAAACGAAGCCGGGAAATGGATTATGGAAGACGAAGAA 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1253 ATACTGAGGCTACTAAGAGATGAAAACGAAGCCGGGAAATGGATTATGGAAGAAGAAGGA 1312
Query 1248 AATGGAGATTGCTTTGATGACGAGGTTTATCCGAATTCCAGCACAGAATTACACTTAAGC 1307
|||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1313 AATGAAGATTGCTTCGATGACGAGGTTTACCCGAATTCCAGCACAGAATTACACTTAAAC 1372
Query 1308 CTTGCGATGCTTGAGGTGGAAGACGATGAATCTGCATCAATCAGCAGCATGGAGAGAAGT 1367
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1373 CTTGCGATGCTTGAGGTGGAAGACGATGAAACTGCATCAATCAGCAGCATGGAGAGAAGT 1432
Query 1368 AACAACAGCCTTTTTTCTTCTTCTTGTTCATCTAGGGAGCTTCAAACATAAGGAGTTCTG 1427
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1433 AACAACAGCCTTTTTTCTTCTACTTGTTCATCTAGGGAGCTTCAAACATAAGGAATTATG 1492
Query 1428 CTTTTAG 1434
|||||||
Sbjct 1493 CTTTTAG 1499
> AT2G16750.1 | Symbols: | Protein kinase protein with adenine
nucleotide alpha hydrolases-like domain | chr2:7271012-7274693
FORWARD LENGTH=2428
Length=2428
Score = 152 bits (82), Expect = 9e-36
Identities = 170/213 (80%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 1186 AGATACTGAGGCTACTAAGAGATGAAAACGAAGCCGGGAAATGGATTATGGA-AGACGAA 1244
||||| ||| ||| ||||||| ||| | || | | ||||||| | | || ||| |||
Sbjct 1946 AGATATTGAAGCTGCTAAGAGGCGAAGATGATGTCTCGAAATGGGTGA-AGATAGAAGAA 2004
Query 1245 GAAAATGGAGATTGCTTT-GATGACGAGGTTTATCCGAATTCCAGCACAGAATTACACTT 1303
|| | | ||| || ||| || ||||||||||| || ||||| | |||||||||||||||
Sbjct 2005 GATGACGAAGA-TGGTTTCGACGACGAGGTTTACCCAAATTCGAACACAGAATTACACTT 2063
Query 1304 AAGCCTTGCGATGCTTGAGGTGGAAGACGATGAATCTGCATCAATCAGCAGCATGGAGAG 1363
||||| |||||| |||| ||||| || |||| |||| |||| ||| ||| |||||||
Sbjct 2064 GAGCCTCGCGATGGTTGACGTGGAGGATAATGACTCTGTGTCAAACAGTAGCTTGGAGAG 2123
Query 1364 AAGTAACAACAGCCTTTTTTCTTCTTCTTGTTC 1396
||||||||||||||||||||||||||||| |||
Sbjct 2124 AAGTAACAACAGCCTTTTTTCTTCTTCTTCTTC 2156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71736578805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5