BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491155
Length=1012
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35020.1 | Symbols: ARAC3, ROP6, RHO1PS, ATROP6, RAC3 | RAC-... 1664 0.0
AT3G51300.1 | Symbols: ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1 | ... 416 2e-115
AT4G35950.1 | Symbols: ARAC6, RAC2, ATROP5, ATRAC6, ROP5, RAC6 ... 392 3e-108
> AT4G35020.1 | Symbols: ARAC3, ROP6, RHO1PS, ATROP6, RAC3 | RAC-like
3 | chr4:16672935-16674771 FORWARD LENGTH=1069
Length=1069
Score = 1664 bits (901), Expect = 0.0
Identities = 983/1021 (96%), Gaps = 12/1021 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaGGAAGAAGAAGACCAAAGAAATTGAAGTGCATGTGAGGCTGCGTAGGAAAAA 60
|||||||||||||||||||||| |||||||||| |||||||||||| || |||| |||||
Sbjct 35 AAAAAAAAGGAAGAAGAAGACC-AAGAAATTGAGGTGCATGTGAGGATGAGTAGTAAAAA 93
Query 61 TTAGGAAGACACTAGTCTGGGAGAGACTCTCAGCAGCTATTTCTTTGTCTTCTTCCTCTT 120
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 94 TTAGGAAGACTCTAGTCTGGGAGAGACTTTCAGCAGCTATTTCTTTGTCTTCTTTCTCTT 153
Query 121 TAAAGAACCTCA--CTCTCTCTC----GTGAAAAATCCCCAATTCGTGAAAAAATTAGGG 174
|||||||||||| ||||||||| || |||||||||||||||||||| |||||||||
Sbjct 154 TAAAGAACCTCACTCTCTCTCTCTTTAGTCAAAAATCCCCAATTCGTGAACAAATTAGGG 213
Query 175 TTTTTGAAGTTTGAAGAAAGAGAGAAAGATGAGTGCTTCAAGGTTTATCAAGTGTGTCAC 234
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 214 TTTTTGAAGTTTGAAGAAGGAGAGAAAGATGAGTGCTTCAAGGTTTATCAAGTGTGTCAC 273
Query 235 TGTCGGCGACGGTGCTGTTGGAAAGACTTGT-TTGCTCATCTCCTACACTAGCAACACTT 293
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 274 TGTCGGCGACGGTGCTGTTGGAAAGACTTGTCTT-CTCATCTCCTACACTAGCAACACTT 332
Query 294 TCCCCACGGATTATGTGCCAACTGTGTTCGATAATTTCAGTGCCAATGTGATTGTAGATG 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 333 TCCCCACGGATTATGTGCCAACTGTGTTCGATAATTTCAGTGCCAATGTGATTGTTGATG 392
Query 354 GGAACACTATCAACTTGGGATTGTGGGATACTGCAGGGCAAGAGGACTACAATAGACTAA 413
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 GCAACACTATCAACTTGGGATTGTGGGATACTGCAGGGCAAGAGGACTACAATAGACTAA 452
Query 414 GACCTTTGAGCTATCGCGGTGCAGATGTCTTCTTACTTGCATTCTCTCTCGTTAGCAAAG 473
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 453 GACCTTTGAGCTATCGCGGTGCAGATGTCTTCTTACTTGCATTCTCACTTGTCAGCAAAG 512
Query 474 CTAGCTATGAAAATGTTTCTAAAAAGTGGGTTCCTGAACTGAGACATTATGCTCCTGGTG 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 CTAGCTATGAAAATGTTTCTAAAAAGTGGGTTCCTGAACTGAGACATTATGCTCCTGGTG 572
Query 534 TTCCCATCATCCTCGTTGGAACAAAGCTTGATCTTCGAGATGATAAGCAATTCTTTGCCG 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 TTCCCATCATCCTCGTTGGAACAAAGCTTGATCTTCGAGATGATAAGCAATTCTTTGCCG 632
Query 594 AGCACCCTGGTGCTGTGCCTATCTCTACCGCTCAGGGTGAAGAACTAAAGAAGCTGATTG 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 AGCACCCTGGTGCTGTGCCTATCTCTACCGCTCAGGGTGAAGAACTAAAGAAGCTGATTG 692
Query 654 GGGCACCTGCTTATATTGAATGCAGTGCAAAAACTCAACAGAATGTAAAAGCAGTGTTTG 713
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 693 GGGCGCCTGCTTATATCGAATGCAGTGCAAAAACTCAACAGAATGTGAAAGCAGTGTTTG 752
Query 714 ATGCGGCTATCAAGGTCGTTCTCCAGCCACCAAAAAACaagaagaagaagaagagaaAAT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 ATGCGGCTATCAAGGTCGTTCTCCAGCCACCAAAAAACAAGAAGAAGAAGAAGAGAAAAT 812
Query 774 CTCAGAAAGGTTGTTCTATACTGTGATTCAACAAGAAGAAAGGAACCAGCAGGAGAATTA 833
|||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||
Sbjct 813 CTCAGAAAGGTTGTTCTATACTCTGATTCAACAAGAAGAAAGGAATCAACAGGAGAATTA 872
Query 834 GAGCTACAAGTATCTGTTTTCTCCTTTTTCATAACTTGTTTACTCAAGGAATCAAAAATC 893
|||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 873 GAGCTATAAGTATTTGTTTTCTCCTTTTTCATAACTTGTTTACCCAAGGAATCAAAAATC 932
Query 894 TGTTGTTTGTAGTCTGGAATTGACAAA-GTTGAAGAACTAGTAACAAGTATTTGTATTCT 952
|||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||
Sbjct 933 TGTTGTTTGTAGTCTGAAAATGACAAAAGTTGAAGAACTAGTAACAAGTATTTGTATTCT 992
Query 953 TGTTTGCATTTTGATCTGTAAATATACCACGAATCCTTGATTTCAT-TGTTTCCTAGATT 1011
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 993 TGTTTGCATTTTGATCTGTAAATATACCACGAATCCTTGATTTC-TCTGTTTCCTAGATT 1051
Query 1012 C 1012
|
Sbjct 1052 C 1052
> AT3G51300.1 | Symbols: ARAC11, ROP1, ROP1AT, ATRAC11, ATROP1
| RHO-related protein from plants 1 | chr3:19042887-19044372
FORWARD LENGTH=1061
Length=1061
Score = 416 bits (225), Expect = 2e-115
Identities = 470/587 (80%), Gaps = 21/587 (4%)
Strand=Plus/Plus
Query 203 ATGAGTGCTTCAAGGTTTATCAAGTGTGTCACTGTCGGCGACGGTGCTGTTGGAAAGACT 262
||||| ||||| ||||| | ||||| || || || || || || ||||| ||||| |||
Sbjct 311 ATGAGCGCTTCGAGGTTCGTAAAGTGCGTGACGGTTGGTGATGGAGCTGTCGGAAAAACT 370
Query 263 TGTTTGCTCATCTCCTACACTAGCAACACTTTCCCCACGGATTATGTGCCAACTGTGTTC 322
|||||| | || || ||||| |||||||||||||| |||||||||||||| || || |||
Sbjct 371 TGTTTGTTGATTTCTTACACAAGCAACACTTTCCCTACGGATTATGTGCCTACCGTTTTC 430
Query 323 GATAATTTCAGTGCCAATG-TGATTG-TAGATGGGAA-CACTATCAA-CTTGGGATTGTG 378
||||||||||||||||||| || | | || || |||| |||| | || ||| ||||||||
Sbjct 431 GATAATTTCAGTGCCAATGTTG-TGGTTA-AT-GGAAGCACTGTGAATCTT-GGATTGTG 486
Query 379 GGATACTGCAGGGCAAGAGGACTACAATAGACTAAGACCTTTGAGCTATCGCGGTGCAGA 438
||| ||||||||||||||||| ||||||||| ||||||| |||| || || || |||||
Sbjct 487 GGACACTGCAGGGCAAGAGGATTACAATAGATTAAGACCACTGAGTTACCGTGGAGCAGA 546
Query 439 TGTCTTC-TTACTT-GCATTCTCTCTCGTTAGCAAAGCTAGCTATGAAAATGTTTCTAAA 496
||| ||| || || || |||||||| | || ||||| || |||||||| || || |||
Sbjct 547 TGTTTTCATT--TTGGCCTTCTCTCTTATCAGTAAAGCCAGTTATGAAAACGTCTCCAAA 604
Query 497 AAGTGGGTTCCTGAACTGAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACA 556
|||||| | || || ||| |||||| || |||||||| |||||| |||| |||||||||
Sbjct 605 AAGTGGATCCCGGAGTTGAAACATTACGCGCCTGGTGTCCCCATCGTCCTTGTTGGAACA 664
Query 557 AAGCTTGATCTTCGAGATGATAAGCAATTCTTTGCCGAGCACCCTGGTGCTGTGCCTATC 616
||||||||||||||||||||||| || |||||| ||| || ||||||||||| || ||
Sbjct 665 AAGCTTGATCTTCGAGATGATAAACAGTTCTTTATCGACCATCCTGGTGCTGTTCCGAT- 723
Query 617 T-CTACCGCTCAGGGTGAAGAACTAAAGAAGCTGATTGGGGCACCTGCTTATATTGAATG 675
| |||| |||||||| || || || | ||||| || || |||||| |||| || |||||
Sbjct 724 TACTACTGCTCAGGGAGAGGAGCTGAGGAAGCAAATAGGAGCACCTACTTACATCGAATG 783
Query 676 CAGTGCAAAAACTCAACAGAATGTAAAAGCAGTGTTTGATGCGGCTATCA-AGGTCGT-T 733
|||| | ||||||||| ||||||| || || |||||||| || || ||| || | || |
Sbjct 784 CAGTTCCAAAACTCAAGAGAATGTGAAGGCGGTGTTTGACGCAGCCATCCGAG-TGGTGT 842
Query 734 CTCCAGCCACCAAAAAACaagaagaagaagaagagaaAATCTCAGAA 780
| || || ||||| || ||||||||||||||| ||| | |||||
Sbjct 843 -TGCAACCGCCAAAG--CA-GAAGAAGAAGAAGAGCAAAGCGCAGAA 885
> AT4G35950.1 | Symbols: ARAC6, RAC2, ATROP5, ATRAC6, ROP5, RAC6
| RAC-like 6 | chr4:17023837-17025863 REVERSE LENGTH=1157
Length=1157
Score = 392 bits (212), Expect = 3e-108
Identities = 473/595 (79%), Gaps = 33/595 (6%)
Strand=Plus/Plus
Query 187 GAAGAAAG-AGAGAAAGATGAGTGCTTCAAGGTTTATCAAGTGTGTCACTGTCGGCGACG 245
|||| ||| |||| | ||||| || |||||||| || ||||| ||||| || || || |
Sbjct 335 GAAG-AAGAAGAGGCA-ATGAGCGCATCAAGGTTCATAAAGTGCGTCACCGTTGGTGATG 392
Query 246 GTGCTGTTGG-AAAGACTTGTTTGCTCATCTCCTACACTAGCAACA-CTTTCCCCACGGA 303
| |||||||| ||| || |||||||| || || || || ||||||| |||| ||||||||
Sbjct 393 GAGCTGTTGGTAAA-ACCTGTTTGCTGATTTCTTATACCAGCAACACCTTT-CCCACGGA 450
Query 304 TTATGTGCCAACTGTGTTCGATAA-TTTCAGTGCCAATGTGATTG-TAGATGGGA-ACAC 360
|||||| || ||||| |||||||| ||| ||||| |||||| ||| || || ||| |||
Sbjct 451 TTATGTTCCGACTGTTTTCGATAACTTT-AGTGCAAATGTGGTTGTTA-AT-GGAGCCAC 507
Query 361 TATCAA-CTTGGGATTGTGGGATACTGCAGGGCAAGAGGACTACAATAGACTAAGACCTT 419
| || ||| |||||||||||||||||||||||||||||||| || ||| |||||||||
Sbjct 508 GGTGAATCTT-GGATTGTGGGATACTGCAGGGCAAGAGGACTATAACAGATTAAGACCTT 566
Query 420 TGAGCTATCGCGGTGCAGATGTCTTC-TTACTTGCATTCTCTCTCGTTAGCAAAGCTAGC 478
|||| || || ||||| ||||| ||| || ||||| ||||||||| |||| || |||||
Sbjct 567 TGAGTTACCGTGGTGCTGATGTTTTCATT-CTTGCCTTCTCTCTCATTAGTAAGGCTAGT 625
Query 479 TATGAAAATGTTTCTAAAAAGTGGGTTCCTGAACTGA-GACATTATGCTCCTGGTGTTCC 537
||||| |||||||| || |||||| ||||||| ||| | || |||||||||||||| ||
Sbjct 626 TATGAGAATGTTTCCAAGAAGTGGATTCCTGAGTTGAAG-CACTATGCTCCTGGTGT-CC 683
Query 538 CA-TCATCCTCGTTGGAAC-AAAGCTTGATCTTCGAGATGATAAGCAATTCTTTGC--CG 593
|| | |||| |||||||| ||| || |||||||||||||| || || || ||| | ||
Sbjct 684 CAATTGTCCTTGTTGGAACCAAA-CTAGATCTTCGAGATGACAAACAGTT-TTT-CATCG 740
Query 594 AGCACCCTGGTGCTGTGCCTATCT-CTACCGCTCAGGGTGAAGAACTAAAGAAGCTGATT 652
| || ||||||||||| ||||| | | || | |||||| || || || |||||||| |||
Sbjct 741 ACCATCCTGGTGCTGTCCCTAT-TACCACTGTTCAGGGAGAGGAGCTGAAGAAGCTAATT 799
Query 653 GGGGCACCTGCTTATATTGAATGCAGTGCAAAAACTCAACAGAATGTAAAAG-CAGTGTT 711
|| || || ||||| || || |||||| ||||| | ||| |||| || || | | |||||
Sbjct 800 GGAGCGCCAGCTTACATCGAGTGCAGTTCAAAATCACAAGAGAACGTGAAGGGC-GTGTT 858
Query 712 TGATGCGGCTATCA-AGGTCGTTCTCCAGCCACCAAAAAACaagaagaagaagaa 765
|||||| || |||| || | || || || || ||||| | ||||| ||||||||
Sbjct 859 TGATGCAGCGATCAGAG-TGGTCCTTCAACCTCCAAAGCAGAAGAAAAAGAAGAA 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49581103089
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5