BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491157
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35000.1 | Symbols: APX3 | ascorbate peroxidase 3 | chr4:166... 1862 0.0
> AT4G35000.1 | Symbols: APX3 | ascorbate peroxidase 3 | chr4:16664822-16667718
REVERSE LENGTH=1226
Length=1226
Score = 1862 bits (1008), Expect = 0.0
Identities = 1139/1200 (95%), Gaps = 17/1200 (1%)
Strand=Plus/Plus
Query 1 GCTGAGGAAAACAGCAGATAACTGACACCGCCCATTCAAATCCCGTTTCTCATTGGGTGG 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTGAGGAAAACAGGAGATAACTGACACCGCCCATTCAAATCCCGTTTCTCATTGGGTGG 60
Query 61 TTTTATCTCTTTGGCCCAAATTTCGGTGCAACCAAATAAAAATCTTCTTCACACACACAT 120
|||||||||||||||||||||||||||| ||||||| ||||| |||| |||||||||
Sbjct 61 TTTTATCTCTTTGGCCCAAATTTCGGTGTAACCAAA-AAAAA---TCTT--CACACACAT 114
Query 121 CCTTGACCATTTTTCTTGTTCATCGCTCTCTTTCTCCTCCACCAATCCCAGACGAGTAGG 180
||||||||| ||||||||||||||||||||||||| || ||| ||||| | ||||||
Sbjct 115 CCTTGACCA-TTTTCTTGTTCATCGCTCTCTTTCTTCTTCACAAATCCTAAACGAGT--- 170
Query 181 AGCGAGCTATGGCGGCACCGATTGTTGACGCTGAGTACTTGAAGGCGATCACCAAGGCTC 240
|| |||||||||| |||||||||||||| || ||||||||||| | |||||| |||||||
Sbjct 171 AG-GAGCTATGGCTGCACCGATTGTTGATGCGGAGTACTTGAAAGAGATCACTAAGGCTC 229
Query 241 GCCGTGACCTCCGGTCTCTCATCGCGAACAAGAACTGTGCTCCGATCATGCTCCGATTGG 300
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 230 GCCGTGAGCTCCGTTCTCTCATCGCGAACAAGAACTGTGCTCCTATCATGCTCCGATTGG 289
Query 301 CATGGCACGATGCTGGAACCTATGATGCTCAATCGAAGACCGGTGGACCTAATGGCTCTA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 CATGGCACGATGCTGGAACCTATGATGCTCAATCGAAGACCGGTGGACCTAATGGCTCTA 349
Query 361 TCAGGAACGAAGAAGAGTTCACTCATGGTGCCAACAGTGGTTTGAAGATCGCTCTCGATC 420
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TCAGGAACGAAGAAGAGCACACTCATGGTGCCAACAGTGGTTTGAAGATCGCTCTCGATC 409
Query 421 TCTGTGAGGGCGTGAAAGCTAAAAATCCCAAAATCACATACGCAGACCTGTATCAGCTTG 480
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 410 TCTGTGAGGGCGTGAAAGCTAAGCATCCCAAAATCACATACGCAGACCTGTATCAGCTTG 469
Query 481 CTGGTGTGGTAGCAGTTGAGGTTACTGGTGGACCTGACATCGTGTTCGTTCCTGGAAGAA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 470 CTGGTGTGGTAGCAGTTGAGGTTACTGGTGGACCTGACATCGTGTTCGTTCCCGGGAGAA 529
Query 541 AGGATTCAAATGTCAGCCCCAAGGAAGGAAGACTTCCTGATGCCAAACAAGGTTTCCAAC 600
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 AGGATTCAAATGTCTGCCCCAAGGAAGGAAGACTTCCTGATGCCAAACAAGGTTTCCAAC 589
Query 601 ATCTTAGAGATGTCTTCTACCGCATGGGACTATCTGATAAGGATATTGTGGCACTCTCAG 660
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 ATCTCAGAGATGTCTTCTACCGCATGGGACTATCTGATAAGGATATTGTGGCACTCTCAG 649
Query 661 GGGGTCATACTCTGGGAAGGGCTCACCCAGAGAGGTCAGGCTTCGATGGACCGTGGACTC 720
|||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |
Sbjct 650 GGGGTCATACTCTGGGAAGGGCTCACCCGGAGAGGTCAGGCTTTGATGGACCATGGACCC 709
Query 721 AAGAGCCGCTGAAGTTTGACAACTCCTACTTCGTGGAACTGCTGAAAGGAGAATCAGAGG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 AAGAGCCGCTGAAGTTTGACAACTCCTACTTCGTGGAACTGCTGAAAGGAGAATCAGAGG 769
Query 781 GCTTGTTGAAACTTCCAACTGACAAGACCTTATTGGAAGACCCGGAGTTTCGTCGTCTTG 840
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 770 GCTTGTTGAAACTTCCAACTGACAAGACCTTATTGGAAGACCCGGAGTTCCGTCGTCTTG 829
Query 841 TTGAGCTTTATGCAAAGGATGAAGATGCATTCTTCAGAGACTATGCGGAATCGCACAAGA 900
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 830 TTGAGCTTTATGCAAAGGATGAAGATGCATTCTTCAGAGACTACGCGGAATCGCACAAGA 889
Query 901 AACTCTCTGAGCTCGGTTTCAACCCGAACTCCTCAGCGGGCAAAGCAGTTGCAGACAGCA 960
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 890 AACTCTCTGAGCTTGGTTTCAACCCAAACTCCTCAGCAGGCAAAGCAGTTGCAGACAGCA 949
Query 961 CGATTCTGGCCCAGAGTGCGTTCGGGGTTGCGGTTGCTGCTGCGGTTGTGGCCTTTGGTT 1020
|||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 950 CGATTCTGGCACAGAGTGCGTTCGGGGTTGCAGTTGCTGCTGCGGTTGTGGCATTTGGTT 1009
Query 1021 ACTTTTACGAGATTCGGAAGAGGATGAAGTAAACGAAATAG-AAGGAAAACACGAAGCAA 1079
||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1010 ACTTTTACGAGATCCGGAAGAGGATGAAGTAAACGAAATAGGAAGTAAAACACGAAGCAA 1069
Query 1080 CGGTTCTCTTATTTGGGCATTAAAGAAACTATTAATCATCTATCGGATCTATTTTGCTGC 1139
|| | |||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1070 CGATGCTCTTATTTGGGTATTAAAGAAACTATTAATCGTCTATCGAATCTATTTTGCTGC 1129
Query 1140 TACA-----CTAAACTATTTGAATCCACGATTCTACTGTTTAGTAGTAAAAAAGTTAAAA 1194
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 TACAAGATTCTAAACTCTTTGAATCCACGATTCTACTGTTTAGTAGTAAAAAAGTTAAAA 1189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58634236560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5