BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491160
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34970.1 | Symbols: ADF9 | actin depolymerizing factor 9 | c... 918 0.0
> AT4G34970.1 | Symbols: ADF9 | actin depolymerizing factor 9 |
chr4:16653704-16654871 FORWARD LENGTH=784
Length=784
Score = 918 bits (497), Expect = 0.0
Identities = 627/683 (92%), Gaps = 35/683 (5%)
Strand=Plus/Plus
Query 1 AAAAGCTCTCTACACTCAAAATATTAACGAAAGAAGAAGAAGACATCATCTTAGCTCACT 60
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 22 AAAAGCTCTCTACACTCAAAATA-TAACGAAAGAACAAGAAGACATCATCTTAGCTCACT 80
Query 61 ATGGCTTTAAAGACGGCGACGAGTGGTATGTGGATGACGGATGATTGCAAGAAATCGTTC 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 ATGGCTTTGAAGACGGCGACGAGTGGTATGTGGATGACGGATGATTGCAAGAAATCGTTC 140
Query 121 ATGGAGATGAAATGGAAGAAAGTGCATAGATACGTCGTTTACAAAATCGAGGAGAAGTCT 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 141 ATGGAGATGAAATGGAAGAAAGTGCATAGATACGTCGTTTACAAACTCGAGGAGAAGTCT 200
Query 181 CGGAAAGTCACCGTCGACAAGGTTGGTGCCGCCGGCGAGAGCTATGACGATCTCGCTGCT 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 201 CGGAAAGTCACCGTCGACAAGGTTGGTGCCGCCGGCGAGAGCTACGACGATCTCGCTGCT 260
Query 241 TCTTTGCCGGAGGACGACTGTCGCTACGCCGTGTTTGATTTCGATTACGTGACCGTCGAT 300
|||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 261 TCTTTGCCGGAGGATGACTGTCGTTACGCCGTGTTTGATTTCGATTACGTCACCGTCGAT 320
Query 301 AACTGTCGTATGAGCAAGATCTTCTTCATAACTTGGTCACCGGAGGCTTCAAGGATAAGG 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 321 AACTGTCGTATGAGCAAGATCTTCTTCATAACTTGGTCGCCGGAGGCTTCAAGGATAAGG 380
Query 361 GAGAAGATGATGTACGCGACGTCGAAGAGCGGACTGAGAAGAGTGTTGGACGGCGTTCAC 420
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 381 GAGAAGATGATGTACGCGACGTCGAAGAGCGGACTGAGAAGAGTGTTGGATGGTGTTCAC 440
Query 421 TACGAGCTTCAAGCCACCGACCCAACCGAGATGGGATTTGATAAAATCCAGGACCGGGCC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 TACGAGCTTCAAGCCACCGACCCAACCGAGATGGGATTTGATAAAATCCAGGACCGGGCC 500
Query 481 AAATGATCACAATACCTAACCGGAGTTACATC---A-T--C-AG-T------A----TTA 522
|||||||||||| || |||| ||||||| ||| | | | || | | |||
Sbjct 501 AAATGATCACAACACATAACTGGAGTTATATCGTCAGTAACTAGCTGTTCTTAACAGTTA 560
Query 523 TGA-----G--CAGCAATTAATTCTCTATTAATGTTACTTAAGTGCTTAACCTCTTCCCT 575
||| | |||||||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 561 TGACTTATGAGCAGCAATTAATTATCTATTAATGTTATTTA-GTGCTTAACCTCTTCCCT 619
Query 576 TTG-TTGTCCAACAAAAT-AGTTTCCTTCCT-TTTTGTTGACAATACTTCTCAACTATTA 632
||| ||||| |||||||| | ||| |||| | |||||||||||||| | || ||||||||
Sbjct 620 TTGGTTGTCAAACAAAATGA-TTTACTTC-TATTTTGTTGACAATAGTACTAAACTATTA 677
Query 633 TTAGTGTTTCA-TTT--TTGTTG 652
||||||||||| ||| ||||||
Sbjct 678 TTAGTGTTTCAGTTTAATTGTTG 700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33556410196
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5