BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491161
Length=1150
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34960.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-... 1677 0.0
> AT4G34960.1 | Symbols: | Cyclophilin-like peptidyl-prolyl cis-trans
isomerase family protein | chr4:16648605-16650897 FORWARD
LENGTH=1186
Length=1186
Score = 1677 bits (908), Expect = 0.0
Identities = 1099/1184 (93%), Gaps = 41/1184 (3%)
Strand=Plus/Plus
Query 1 CTGAAGAAACACACTGCAATTGAGATCGATTTCGACTGTGAGTTAACTTTGATT------ 54
||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 2 CTGAAAAAACACACTGCAATTGAGATCGATTTCGACTGTAAGTGAACTTTGATTGCCGCG 61
Query 55 --G------C---TCGCTGGTCACAAGCTTTTCAGTGAATTCGATT-GCATAGAACTaga 102
| | |||| || |||||| |||||||||||||| ||| |||||||||| ||
Sbjct 62 AAGATTACTCAAATCGCCGGACACAAGTTTTTCAGTGAATTCCATTGGCATAGAACTCGA 121
Query 103 gagaaagagacacagagagagagagagaTCTAACACGAGTCGAAGTTTCTGACTTTTTCC 162
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 122 GAGAAAGAGACACAGAGAGAGAGAGAGATCTAACAAGAGTCAAAGTTTCTGACTTTTTCG 181
Query 163 CATTCtttttttGAGATCGAGTTCTGGTGTTTGTTGGCGTGTGAGATGAATTCTTAACAA 222
||||| |||||||||||||||||| || |||||||||||||||||||||||||||| ||
Sbjct 182 CATTC--TTTTTGAGATCGAGTTCT-GTTTTTGTTGGCGTGTGAGATGAATTCTTAAGAA 238
Query 223 -G--GAAGAAGAAGAACGAAAGATGCGTAGAGAGATCTCGTTTTTGCTACAGCCCAGGTG 279
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GGAAGAAGAAGAAGAAGGAAAGATGCGTAGAGAGATCTCGTTTTTGCTACAGCCCAGGTG 298
Query 280 TCTTCTTCTCCTCGTTGTCCTAACGATTTTCCTCGTCTTCGCGCTCTTCAACTCCGGAAA 339
||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 299 TCTTCTTCTTCTCGTTGCCCTAACGATTTTCCTCGTCTTCGCGCTCTTCAACACCGGAAA 358
Query 340 AGATGAGGAGAAGCAAGTAATCGAAGATCACGAAATCACCAACAGGGTTTTTCTCGATGT 399
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 359 AGATGAGGAGAAGCAAGTAATTGAAGATCATGAAATCACCAACAGGGTTTTTCTCGATGT 418
Query 400 TGATATTGACGGCCAACGCTTAGGCAGGATCGTTATCGGACTATATGGCACTGTTGTACC 459
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 419 TGATATTGATGGCCAACGCTTAGGCAGGATTGTTATCGGACTATATGGCACTGTTGTACC 478
Query 460 CAAAACTGTAGAAAATTTCAGGGCTTTATGCACAGGAGAGAAGGGGAAGACCTCAAGCGG 519
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 479 CAAAACTGTAGAAAATTTCAGGGCTTTATGCACAGGGGAGAAGGGTAAAACCTCAAGCGG 538
Query 520 AAAGCCTTTACATTATAAGGGAACACCGTTTCATCGTATAATATCTGGATTTGTAATCCA 579
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 539 AAAGCCTTTACATTATAAGGGAACACCATTTCATCGTATAATATCTGGATTTGTAATCCA 598
Query 580 AGGAGGAGACATTATCCATGGTGATGGAAAAAGTAGTGAGTCAATCTATGGTGGTACCTT 639
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 599 AGGAGGAGACATTATCCATGGTGATGGAAAAAGTAGTGACTCAATCTATGGTGGAACCTT 658
Query 640 TCCTGACGAAAATTTCAAGATAAAGCATTCACACGCAGGTGTTGTAGCGATGGCTAATAC 699
|||||||||||||||||||||| ||||||||||||||||| | ||||| |||||||||||
Sbjct 659 TCCTGACGAAAATTTCAAGATACAGCATTCACACGCAGGTATGGTAGCAATGGCTAATAC 718
Query 700 AGGACCGGATTCTAATGGCTCGCAGTTCTTTATCACTACTGTTAAGGCTAGCTGGTTGGA 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGGACCGGATTCTAATGGCTCGCAGTTCTTTATCACTACTGTTAAGGCTAGCTGGTTGGA 778
Query 760 AGGAGAACATGTGGTGTTTGGAAAGGTAATACAAGGAATGGACAATGTATTCGCCATTGA 819
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 779 AGGAGAACATGTGGTGTTGGGAAAGGTGATACAAGGAATGGACAATGTATTCGCCATTGA 838
Query 820 AGGTGGAGCTGGAACTTACAGTGGCAAACCCAGGAAGAAAGTTGTGATTGCTGATTCTGG 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGGTGGAGCTGGAACTTACAGTGGCAAACCCAGGAAGAAAGTTGTGATTGCTGATTCTGG 898
Query 880 AGAGATCCCTAAAGACAAATGGGATGAAGAGAGATGACCAAGACAA-CCTAAGATACACA 938
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 899 AGAGATCCCTAAAGACAAATGGGATGAAGAGAGATGACAAAGACAAACCTAAGATACACA 958
Query 939 TCACTAC-A-AA-TCTGGTTCTGTTCCTGTGAGATTCTCTGTCTCTGTTTTTTCTTTCTA 995
|||||| | || ||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 959 GCACTACGACAAATCTGGTTCTGTTCCTGTGAGATTCT--GTCTCTGTATTTTCTTTCTA 1016
Query 996 TTTATAGTTTTGCACATGTGATGATCTGAATTCTGAACACAATGCCAATGTAGTTAGTGT 1055
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 1017 TTTATAGTTTTGCACATGTGATGATCTGAATTCTGAACGCAATGTCACTGTAGTTAGTGT 1076
Query 1056 TTAAAG--G-------AAGCATCTGTAGCTTTTCACTTAAAAAGTTTTTCTAGACTTTAT 1106
|||||| | |||||||||||||||||||||| | |||||||||||||||||
Sbjct 1077 TTAAAGCTGGGCCTGGAAGCATCTGTAGCTTTTCACTTGAG--GTTTTTCTAGACTTTAT 1134
Query 1107 TGATATGATTTTTAGTTCAGTCTACTACAGTTATGTAGATATAT 1150
| ||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1135 TTATATGATTTTTAGTTCACTCTACTTCAGTTATGTAGATATAT 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56425412580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5