BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491167
Length=2266
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosp... 3249 0.0
> AT4G34910.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:16631533-16635149
FORWARD LENGTH=2324
Length=2324
Score = 3249 bits (1759), Expect = 0.0
Identities = 2141/2312 (93%), Gaps = 79/2312 (3%)
Strand=Plus/Plus
Query 1 GAAACGCGGCGGAGGAGG-TTTACCAACCATTATT---TTC-C--CTT-A-CTTCTTCCT 51
|||||||||||||||||| |||| | || ||| || ||| | ||| | |||||||||
Sbjct 19 GAAACGCGGCGGAGGAGGTTTTA-CGACTATT-TTCCCTTCACTTCTTCATCTTCTTCCT 76
Query 52 GCGCCGCTTTTCAAACTTATTCGACTAGACAAGCTCGGAAATTTCTGA-ATT-CATGGGT 109
|||||||||||||||| |||||||| |||||| |||||||||||| | ||| |||||||
Sbjct 77 GCGCCGCTTTTCAAACCTATTCGACCAGACAAACTCGGAAATTTC--ATATTCCATGGGT 134
Query 110 AAGACCAAG-TATAAACCTGTGGAGGATGTGAACTCTGAAGTGGTGGATGATGTTGAGAT 168
||||| ||| || ||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 135 AAGACGAAGTTA-AAACCTGTGGAGGATGTGAACTCGGAAGTGGTGGACGAAGTTGAGAA 193
Query 169 AGCagaggaagtagaagaacagagaaacgacggagaagttgaagaagaagaagaacaaaa 228
|||||||||||| || ||||||||||||||| || | ||| |||||||||| |||||
Sbjct 194 AGCAGAGGAAGTTGAGGAACAGAGAAACGAC--AG-A---GAACAAGAAGAAGAGCAAAA 247
Query 229 acaagaagagacacctaagagtttcgaagagCTAGGGCTTGATTCTCGTCTAATTCGTGC 288
| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 248 AGAAGAAGAGGCACCTAAAAGTTTCGAAGAGCTAGGGCTTGATTCTCGTCTAATTCGTGC 307
Query 289 GCTAACTAAAAAGGGTATAGAGAAACCAACCCTTATCCAGCAATCAGCCATTCCTTACAT 348
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 308 CCTAACTAAAAAGGGTATAGAGAAACCAACCCTTATTCAGCAATCAGCCATTCCTTACAT 367
Query 349 TCTGGAAGGAAAAGATGTGGTTGCTAGGGCAAAGACTGGTTCAGGTAAGACTTTGGCTTA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TCTGGAAGGAAAAGATGTGGTTGCTAGGGCAAAGACTGGTTCAGGTAAGACTTTGGCTTA 427
Query 409 CCTTTTGCCATTGCTTCAGAAGCTGTTTTCAGCAGATTCTG-GAAGCAAGAAGAAGCTTG 467
||||||||||||||| |||||||| |||||||||||||||| | ||||||||||||||||
Sbjct 428 CCTTTTGCCATTGCTCCAGAAGCTATTTTCAGCAGATTCTGTG-AGCAAGAAGAAGCTTG 486
Query 468 CTCCTTCTGCATTTATTCTTGTTCCATCTCGAGAATTATGTCAGCAGGTTTACTCCGAGG 527
||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct 487 CTCCTTCTGCATTTATTCTTGTTCCATCTCGAGAACTATGTCAGCAGGTTTACACAGAGG 546
Query 528 TTTCTTCGCTTATTGAGCTGTGTAGGGTTCAGCTGAAAGCAGTGCAGTTGACTAGTAGCA 587
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 547 TTTCATCGCTTATTGAGCTGTGTAGAGTTCAGCTAAAAGCAGTGCAGTTGACTAGTAGCA 606
Query 588 TGTCTGCTTCTGATATGCGTAATGCATTGGCTGGACTGCCTGAGGTTCTTGTCTCCACAC 647
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 607 TGTCTGCATCTGATATGCGTAATGCATTGGCTGGACTGCCTGAGATTCTTGTCTCCACAC 666
Query 648 CTGCTTGTATTCCGAAATGTTTTGCTGCCGGAGTTTTAGAGCCCACTGCTGTCAGTGAAT 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CTGCTTGTATTCCGAAATGTTTTGCTGCCGGAGTTTTAGAGCCCACTGCTGTCAGTGAAT 726
Query 708 CACTTGCAATTCTGGTTCTTGATGAGGCAGATCTTTTGTTGTCATATGGATATGAAGATA 767
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 CACTTTCAATTCTGGTTCTTGATGAGGCAGATCTTTTGTTGTCATATGGATATGAAGATA 786
Query 768 ATCTAAGATCGGTAACTTCAATAATCCCAAGGCGTTGCCAATGCCTTCTTATGTCGGCTA 827
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 ATCTAAGGTCGGTAACATCAATAATCCCAAGGCGTTGCCAATGCCTTCTTATGTCGGCTA 846
Query 828 CCACAAGTTCTGATGTCGAAAAATTGAAGAAATTGATTCTGCACAACCCAATCGTTTTGA 887
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 CCACAAGCTCTGATGTCGAAAAATTGAAGAAATTGATTCTGCACAACCCAATCGTTTTGA 906
Query 888 CCTTGACAGAAGAGAATGACAAGGATGAGGCCGTCCCAAGTAATGTTCAGCAGTTTTGGA 947
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 907 CCTTGACAGAAGATAATGACAAGGAAGAGGCCGTCCCAAGTAATGTTCAGCAGTTTTGGA 966
Query 948 TTTCTTGCAGTGCTCAGGATAAACTGCTTCACATTCTTGCTCTCTTGAAGCTAGAGATTG 1007
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 967 TCTCTTGCAGTGCTCAGGATAAACTGCTTCACATTCTTGCTCTCTTGAAGCTAGAGGTTG 1026
Query 1008 TTCAGAAGAAAATTCTGATATTCATCAATACGATTGACATGGGATTCAGGTTGAAATTAT 1067
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1027 TTCAGAAGAAAATTCTGATTTTCATCAATACAATTGACATGGGATTCAGGTTGAAATTAT 1086
Query 1068 TCTTGGAAAAGTTTGGAATTAAGTCTGCAATTTTAAACGGGGAGTTGCCTCAGAATTCTC 1127
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1087 TCTTGGAAAAGTTTGGAATCAAGTCTGCAATTTTAAACGGGGAATTGCCTCAGAATTCTC 1146
Query 1128 GGCTACATATCCTTGAGCAATTCAATGCAGGTCTTTTCGATTACTTGATTGCAACGGATG 1187
| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1147 GACTTCATATCCTTGAGCAATTCAATGCAGGACTTTTCGATTACTTGATTGCAACGGATG 1206
Query 1188 ATAATAGCCAGACTAAAAAACAAAAGGAAGAGGCTAAAGGTGAGGAGAACAAGGAGAACA 1247
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1207 ATAATAGCCAGACTAAAAAACAAAAGGAAGAGGCTAAAGGTGAGGCTAACAAGGAGAACA 1266
Query 1248 ATAAAAACAATAAGCGTAGCAAACCAAAGCTGGATGCCGAGTTCGGTGTAGTTAGGGGAA 1307
| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1267 AGAAAAATAATAAGCGTAGCAAACCAAAGCTAGATGCTGAGTTCGGTGTAGTTAGGGGAA 1326
Query 1308 TTGATTTCAAAAAAGTTCACACGGTCATAAACTTTGATATGCCTCAAAGTGTTACTGGAT 1367
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1327 TTGATTTCAAAAAAGTTCACACGGTTATAAACTTTGATATGCCTCAAAGTGTTACTGGAT 1386
Query 1368 ATATTCATCGAATTGGGCGTACAGGGAGAGCATATAGCAGCGGTTCTTCCGTTTCTCTTG 1427
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1387 ATATCCATCGAATTGGGCGTACAGGGAGAGCATATAGCAGCGGATCTTCCGTTTCTCTTA 1446
Query 1428 TTTCTCCTGATGAGATGGAAGGGTTTGAAGATATAAAGTCCTTCTTAGCAAGTGACAAGA 1487
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1447 TTTCTCCTGATGAGATGGAAGGGTTTGAAGATATAAAGTCCTTCTTAGCAAGCGACAAGA 1506
Query 1488 ACAAGGATAGTGATATTATCACACCCTTTCCTTTGTTGACCGAAAATGCTGTGGAGTCTC 1547
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1507 ACAAGGATATTGATATTATCACACCCTTTCCTTTGTTGACCGAAAATGCTGTCGAGTCTC 1566
Query 1548 TTAGATATAGAGCTGAGGATGTGGCAAAGAGTGTTACAAAGATTGCGGTTCGAGAGTCTC 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 TTAGATATAGAGCTGAGGATGTGGCAAAGAGTGTTACAAAGATTGCGGTTCGAGAGTCTC 1626
Query 1608 GAGCTCAGGATTTGAGGAATGAGATAATCAACTCCGAAAAGTTAAAAGCTCATTTTGAAG 1667
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1627 GAGCTCAGGATTTGAGGAATGAGATAATCAACTCTGAAAAGTTAAAAGCTCATTTTGAAG 1686
Query 1668 CTAATCCAAGAGACTTAGATCTGTTGAGACATGACAAGCCTCTGAGTAAGACTGCACCTG 1727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1687 CTAATCCAAGAGACTTAGATCTGTTGAGACATGACAAGCCTCTGAGTAAGACTGCACCTG 1746
Query 1728 CACCACATCTAAAGGACATCCCTGAGTATCTAGTGGACCCAAAGACTCAAGAAGCAAGCA 1787
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1747 CACCACATCTAAAGGACATCCCCGAGTATCTAGTGGACGCAAAGACTCAAGAAGCAAGCA 1806
Query 1788 AGATGGTAAAACTAGCTAGAGCCGCAATGGGCAACACTAGGAGATCTGGTGGAGGCAGTG 1847
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1807 AGATGGTAAAGCTAGCTAGAGCCGCAATGGGCAACACTAGGAGATCTGGTGGAGGCGGTG 1866
Query 1848 GTCGCAACAACAAAAACAAGAAACGGTCCAGAAAAGGCAGCGACCCACTCAAAACCTTCA 1907
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1867 GTCGCAACAACAAAAACAAGAAACGGTCTAGAAAAGGCAGCGACCCACTCAAAACCTTCA 1926
Query 1908 ACCCCAATGGATCTAAGAGAGGACACGGTGGCGGCGTTGGCCAGAAGAAGGATGGCAGAG 1967
|||| ||||| |||||||||||| | | ||||||||||||| | |||||| ||
Sbjct 1927 ACCCTAATGGGTCTAAGAGAGGA---G----C--CGTTGGCCAGAAG--G-ATGGCAAAG 1974
Query 1968 ATTCTAGCGATGGCTCGACCAAGAAACAGAAGACAGTTTAAGTTATTTCGTTTTGC-TCA 2026
|||||||| | | |||||| |||||||||||||||||||||||||||||| || | |
Sbjct 1975 ATTCTAGC--T--C--GACCAAAAAACAGAAGACAGTTTAAGTTATTTCGTTTAGCGT-A 2027
Query 2027 AGTGTAACCAAATTTTGACT-GTTATAATCAGTCACACAAAAGAACGGAGACAAGAGCAA 2085
|||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||||||
Sbjct 2028 AGTGTAACCAAATTTTGACTCGTTATAGTCAATCACACAAAAGAACGGAGACGAGAGCAT 2087
Query 2086 CCATCTTT-TAGCTCTATT-ATTGTAGCATCAGAAGAGAAAGTTTTGTGA---T-TGAT- 2138
| |||||| |||||||||| || |||||||||| ||| |||||||||||| | | ||
Sbjct 2088 CAATCTTTGTAGCTCTATTCAT-GTAGCATCAGGAGACAAAGTTTTGTGAGCATATTATT 2146
Query 2139 A---TA--GA--TTTTTGT--AA---GCTTGT-G-A--C----GACGACC-T-T-TGTAG 2175
| | || ||||| | || | || | | | | || ||| | | || ||
Sbjct 2147 AGCCTTTTGAGGTTTTTATTGAAATAGATTTTTGTAAGCTTATGAAGACGATATCTGCAG 2206
Query 2176 GGTTCAAAATGTTCTAGTCCACATGGTTTTGGACTCATTTAGATATTTTTCGAATTGAAT 2235
|||||||||| || | ||||||||||||||||| |||||||||||||| |||| |||||
Sbjct 2207 GGTTCAAAATACTCAAATCCACATGGTTTTGGACCCATTTAGATATTTT-CGAAATGAAT 2265
Query 2236 CGACACAT-ATATGCTTGCACGTTTTTGGTTC 2266
| ||||| |||||||||||||||||| ||||
Sbjct 2266 TGGCACATTATATGCTTGCACGTTTTTTGTTC 2297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112449220800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5