BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491168
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34880.1 | Symbols: | Amidase family protein | chr4:1661554... 2080 0.0
> AT4G34880.1 | Symbols: | Amidase family protein | chr4:16615549-16617424
FORWARD LENGTH=1401
Length=1401
Score = 2080 bits (1126), Expect = 0.0
Identities = 1247/1306 (95%), Gaps = 6/1306 (0%)
Strand=Plus/Plus
Query 69 GCTTACCTCAATGTTCTCGATCCAAGAAGCCACCATTGAAGACATCAGACTTGCTTTCAA 128
||||| ||||| |||||||||||||||||| |||||||||||||| ||| ||||||||||
Sbjct 99 GCTTAGCTCAACGTTCTCGATCCAAGAAGCTACCATTGAAGACATTAGAGTTGCTTTCAA 158
Query 129 GGAGAAACGACTAACATCAAAGCAGCTTGTGGAGTTGTATCTCGAAGCAATCTCCAAACT 188
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 CGAGAAACGACTAACATCAAAGCAGCTTGTGGAGTTGTATCTCGAAGCAATCTCCAAACT 218
Query 189 TAATCCAATACTCCACGCAGTCATCGAGACGAATCCTGATGCGAATCA-ACAAGCAGAGA 247
||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 219 TAATCCAATACTCCACGCAGTCATCGAGACGAATCCTGATGCG-TTGATCCAAGCAGAGA 277
Query 248 TCGCAGACAAAGAACGTGACCTCAAAAACGCCACTAAGCTTCCTATCTTGCACGGTGTTC 307
||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 278 TCGCAGACAGAGAACGTGACCTTAAAAACACCACTAAGCTTCCTATCTTGCACGGTGTTC 337
Query 308 CGGTTCTGCTCAAGGATTCAATATCCACCAAGGACAAGCTTAACACCACGGCTGGCTCGT 367
||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 338 CGGTTCTTCTCAAGGATTCCATATCTACCAAGGACAAGCTTAACACCACGGCTGGCTCGT 397
Query 368 TTGCCTTGCTTGGTTCGGTCGTGGCTCGAGACGCCTGTGTTGTCAAGAGACTAAGAGAAT 427
|||||||||||||||||||||||||||||||||| ||||||| || ||||| |||||||
Sbjct 398 TTGCCTTGCTTGGTTCGGTCGTGGCTCGAGACGCGGGTGTTGTTAAAAGACTGAGAGAAT 457
Query 428 CTGGTGCTGTGATCTTGGGCAAAGCCAGTTTAAGTGAATGGGCTAATTTTCGATCTTTCT 487
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 458 CTGGTGCTGTGATCTTGGGCAAAGCCAGTTTAAGTGAATGGGCTCATTTTCGATCTTTCT 517
Query 488 CCATCCCAGATGGTTGGAGCGCACCAAGTCAGAGCTCTGTGGTCGGGATTAAACCGAGTG 547
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 518 CCATCCCAGATGGTTGGAGCGCACCAAGTCAGAACTCTGTGGTCGGGATTAAACCGAGTG 577
Query 548 TCGGGCTCACGAGCCGAGCCGGGGTAGTTCCTATCTCCTTGAGACAGGACAGTATAGGGC 607
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 578 TCGGACTCACGAGCCGAGCCGGGGTAGTTCCTATCTCCTTGAGACAGGACAGTATTGGGC 637
Query 608 CGATTTGTAGGACAGTTTCGGATGCTGTTCATCTCCTTGATGCTATTGTTGGTTATGATC 667
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 638 CGATTTGTAGGACAGTGTCGGATGCTGTTCATCTCCTTGATGCTATTGTGGGTTATGATC 697
Query 668 CATTGGACAAGGCCACCAAATCTGCGTCTGAGTTCATACCTGAAGGGGGTTACAAGCAGT 727
|||||||| ||||||| ||| ||||||| ||||||||||||||||| |||||||||||||
Sbjct 698 CATTGGACGAGGCCACGAAAACTGCGTCCGAGTTCATACCTGAAGGCGGTTACAAGCAGT 757
Query 728 TTCTGACAACTAGTGGCCTCAAAGGTAAGAGATTAGGGATTGTAATGAAGCATTCTTCTC 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TTCTGACAACTAGTGGCCTCAAAGGTAAGAGATTAGGGATTGTAATGAAGCATTCTTCTC 817
Query 788 GTCTTGATCATCACATCAAAACATTAAGACGAGAAGGTGCTATCGTCATTAACAATCTAA 847
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 818 TTCTTGATCATCACATCAAAACATTAAGACGAGAAGGCGCTATTGTCATTAACAATCTGA 877
Query 848 CGATACCAAACATGGAAGTCATTGTGGGTGGGACTGATAGTGGTGAAGAGATAGCACTTT 907
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 CGATACCAAACATCGAAGTCATTGTGGGTGGGACTGATAGTGGTGAAGAGATAGCACTTT 937
Query 908 TGGCTGAGTTCAAGATGTCTCTCAATGCATATCTTAAAGAGCTTGTGAAATCACCAGTCC 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 TGGCTGAGTTCAAGATGTCTCTCAATGCATATCTTAAAGAGCTTGTGAAATCACCAGTCC 997
Query 968 GGTCCTTAGCAGATGTTATTGCCTACAACGAGGAATTCGCTGAACAAGAAAAAGTGAAAG 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 GGTCCTTAGCAGATGTTATTGCCTACAACGAGGAATTCGCTGAACAAGAAAAAGTGAAAG 1057
Query 1028 AATGGGGACAAGAGGTGTTCCTTACAGCAGAAGCCACAAATGGAATGGGTGAGAAAGAGA 1087
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1058 AATGGGGACAAGAGGTGTTCCTTACAGCAGAAGCCACTAGTGGAATGGGTGAGAAAGAGA 1117
Query 1088 AAGCAGCGTTGCAAAAAATGAAAGAACTATCGAGGAATGGAATCGAAAAGCTAAT-GAAA 1146
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1118 AAACAGCGTTGCAGAAAATGAAAGAACTATCGAGGAATGGAATCGAAAAGCTAATTGAA- 1176
Query 1147 GAGAGGAATTTAGATTCAATAGTGGCACTTGGTTCA-AGTTTGAGCTCTGTCCTCGCCAT 1205
|||| || |||||| |||||||| ||||||||||| | ||||||||||||||| |||||
Sbjct 1177 GAGAACAAGTTAGATGCAATAGTGACACTTGGTTCAGA-TTTGAGCTCTGTCCTAGCCAT 1235
Query 1206 TGGAGGGTATCCAGGAATCAATGTCCCTGCAGGATATGATAATGGAGGAGTTCCATTTGG 1265
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||
Sbjct 1236 TGGAGGGTATCCAGGAATCAATGTCCCTGCAGGATACGATAGTGGAGGAGTTCCATATGG 1295
Query 1266 AATAAGCTTTGGAGGACTGAGATTCTCAGAGCCAAAGCTCATTGAGATTGCTTATGCCTT 1325
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1296 GATTAGCTTTGGAGGACTGAGATTCTCAGAGCCAAAGCTCATTGAGATTGCTTTTGCCTT 1355
Query 1326 CGAACAAGCAACTCTTATTAGAAAGCCACCCAAGTTCATAGCTTGA 1371
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 TGAACAAGCAACTCTTATTAGAAAGCCACCCAAGTTCATAGCTTGA 1401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67519733025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5