BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491169
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34870.1 | Symbols: ROC5, ATCYP1 | rotamase cyclophilin 5 | ... 905 0.0
> AT4G34870.1 | Symbols: ROC5, ATCYP1 | rotamase cyclophilin 5
| chr4:16614327-16615313 FORWARD LENGTH=987
Length=987
Score = 905 bits (490), Expect = 0.0
Identities = 570/608 (94%), Gaps = 7/608 (1%)
Strand=Plus/Plus
Query 55 AATCTTCTTCATCGATTTCTCTCTTCAAAATCTTCCAGAAAAAATGGCAAACCCTAGAGT 114
|||||||||||||||||||||||||| ||||| ||| |||| ||| | |||||||||||
Sbjct 84 AATCTTCTTCATCGATTTCTCTCTTCCAAATC-TCC-CAAAAGATGTCGAACCCTAGAGT 141
Query 115 TTTCTTCGACATGAGTCTGAGCGGTACTCCGATCGGTCGGATCGAGATGGAGCTATTCGC 174
|||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 142 TTTCTTCGACATGAGTCTCAGCGGTACTCCCATCGGACGGATCGAGATGGAGCTTTTCGC 201
Query 175 TGATACGACCCCAAACACGGCGGAGAATTTCCGTGCTCTGTGTACCGGAGAGAAAGGAAT 234
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 202 TGATACAACCCCAAACACGGCGGAGAATTTCCGTGCTCTCTGTACCGGCGAGAAAGGAAT 261
Query 235 CGGAAAGATGGGTAAGCCACTTCACTACAAGGGATCGATCTTCCACCGTGTGATTCCCGG 294
|||||| | |||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 262 GGGAAAGCTAGGTAAGCCACTTCACTTCAAAGGATCGATCTTCCACCGTGTGATTCCCGG 321
Query 295 ATTCATGTGTCAGGGAGGTGATTTCACCGCCAAGAACGGAACCGGTGGTGAATCGATCTA 354
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 ATTCATGTGTCAAGGAGGTGATTTCACCGCCAAGAACGGAACCGGTGGTGAATCGATCTA 381
Query 355 CGGTGCTAAGTTCAAAGACGAGAACTTTATTAAGAAGCATACCGGAGCTGGGATTCTCTC 414
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 382 CGGTGCTAAGTTCAAGGACGAGAACTTTATCAAGAAGCATACAGGAGCTGGGATTCTCTC 441
Query 415 AATGGCTAACTCTGGTGCTAACACTAACGGATCTCAGTTCTTCATCTGTACCGATAAGAC 474
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 AATGGCTAACTCTGGTCCTAACACTAACGGATCTCAGTTCTTCATCTGTACCGATAAGAC 501
Query 475 CTCGTGGTTAGATGGTAAGCACGTTGTGTTTGGACAAGTTGTTAAAGGCTTGGACGTCGT 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 GTCGTGGTTAGATGGTAAGCACGTTGTGTTTGGACAAGTTGTTAAAGGCTTGGACGTCGT 561
Query 535 CAAGGCCATTGAGAAAGTTGGATCTGATTCTGGAAAGACTTCCAAAGTCGTAACCATCAC 594
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 562 GAAGGCGATTGAGAAAGTTGGATCTGATTCTGGAAAGACTTCCAAAGTCGTTACCATCAC 621
Query 595 TGATTGTGGTCAGCTTTCTTAGATCTGAGTGAGTGACTGAGAGAAAGACCTT-ATCTTTA 653
||||||||||||||||||||||||||||||||| | ||||||| | || |||||||
Sbjct 622 TGATTGTGGTCAGCTTTCTTAGATCTGAGTGAGAAAGTGAGAGA----CTTTGATCTTTA 677
Query 654 TGAATAAT 661
||| ||||
Sbjct 678 TGAGTAAT 685
Score = 93.5 bits (50), Expect = 3e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1 TTTTCAGATTCACCGCTTTAAAAATTAAATCCTCTCTATAAGAACCTCTCCAAAAA 56
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 2 TTTTCAGATTCACCGTTTTAGAAATTAAATCCTCTCTATAAGAACCTCTCCAAAAA 57
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43753942037
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5