BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491172
Length=1330
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34850.1 | Symbols: LAP5 | Chalcone and stilbene synthase fa... 2128 0.0
AT4G34860.1 | Symbols: | Plant neutral invertase family protei... 119 8e-26
> AT4G34850.1 | Symbols: LAP5 | Chalcone and stilbene synthase
family protein | chr4:16608313-16609829 FORWARD LENGTH=1324
Length=1324
Score = 2128 bits (1152), Expect = 0.0
Identities = 1273/1330 (96%), Gaps = 14/1330 (1%)
Strand=Plus/Plus
Query 1 AGACCCAAGATTTGAGTCTTTGACAAGAGAAAACATATAGAAATGGGAAGCATCGATGCC 60
|||||||||||||||||| || | | | ||||| ||| |||||||||||||||||||
Sbjct 1 AGACCCAAGATTTGAGTC-TT--C-A-A-CAAACAGATACAAATGGGAAGCATCGATGCT 54
Query 61 GAAGTATTGGGTTCAGAGAAGAAATCAAACCCGGGAAAAGCGACAATTCTTGCTCTCGGA 120
| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 55 GCAGTGTTGGGTTCAGAGAAGAAATCAAACCCGGGAAAAGCCACAATTCTTGCTCTGGGA 114
Query 121 AAAGCCTTTCCTCACCAGCTAGTAATGCAAGAGTACTTAGTCGATGGCTACTTCAAAACC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 AAAGCCTTTCCTCACCAGCTAGTAATGCAAGAGTACTTAGTCGATGGCTACTTCAAAACC 174
Query 181 ACCAAGTGTGATGACCCTGAACTCAAACAGAAGCTTACTCGTCTCTGCAAGACAACAACG 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 175 ACCAAGTGTGATGACCCTGAACTCAAACAGAAACTTACTCGTCTCTGCAAGACAACAACG 234
Query 241 GTGAAGACAAGGTATGTTGTGATGTCGGAGGAGATTCTCAAGAAGTATCCAGAACTTGCC 300
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 235 GTGAAGACAAGGTATGTTGTGATGTCAGAGGAGATTCTCAAGAAGTACCCAGAACTTGCC 294
Query 301 ATTGAAGGAGGATCCACAGTGACGCAGCGTCTAGACATCTGCAACGATGCAGTGACCGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ATTGAAGGAGGATCCACAGTGACGCAGCGTCTAGACATCTGCAACGATGCAGTGACCGAG 354
Query 361 ATGGCAGTAGAAGCCTCCAGAGCATGCATCAAGAACTGGGGGCGTTCTATTTCGGAAATA 420
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || |||
Sbjct 355 ATGGCAGTAGAAGCCTCCAGAGCCTGCATCAAGAACTGGGGACGTTCTATTTCCGACATA 414
Query 421 ACTCACCTTGTCTATGTCTCCTCAAGCGAAGCTCGTCTTCCTGGTGGGGACTTGTACTTA 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 415 ACTCACGTTGTCTATGTCTCCTCAAGCGAAGCTCGTCTTCCTGGTGGGGACTTGTACCTG 474
Query 481 GCCAAGGGGCTTGGACTCAGTCCTGACACACACCGTGTTCTGCTCTACTTCGTCGGCTGT 540
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 475 GCCAAGGGGCTTGGACTCAGTCCTGACACACACCGTGTTCTGCTCTACTTTGTTGGCTGT 534
Query 541 TCTGGTGGCGTTGCAGGTCTCCGTGTAGCCAAAGACATAGCCGAGAATAATCCGGGCAGT 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 535 TCTGGTGGCGTTGCAGGTCTCCGTGTAGCCAAAGACATCGCCGAGAATAATCCGGGCAGT 594
Query 601 AGAGTTTTGCTTGCCACGTCCGAGACAACCATCATTGGGTTCAAACCCCCAAGTGTGGAT 660
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 595 AGAGTTTTGCTTGCCACGTCTGAGACAACCATCATTGGGTTCAAGCCCCCAAGTGTGGAT 654
Query 661 AGACCGTATGATCTTGTTGGGGTGGCGTTGTTTGGTGATGGAGCCGGAGCTATGATCGTC 720
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 655 AGACCGTATGATCTTGTTGGGGTCGCGTTGTTTGGTGATGGAGCCGGAGCTATGATCATT 714
Query 721 GGATCCGATCCAGACCCGATCTGCGAGAAGCCTCTCTTTGAGCTTCACACTGCAATACAG 780
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 715 GGATCCGATCCAGACCCGATCTGCGAGAAGCCTCTCTTTGAGCTTCATACTGCAATACAG 774
Query 781 AATTTTTTACCTGACACAGAGAAGACAATAGATGGAAGGCTAACAGAACAAGGGATAAAC 840
|| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 775 AACTTTTTACCTGAAACAGAGAAGACGATAGATGGAAGGCTAACAGAACAAGGGATAAAC 834
Query 841 TTCAAGCTAGCGAGAGAGCTTCCACAGATAATAGAAGACAACGTGGAGAATTTCTGCAAG 900
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 835 TTCAAGCTATCGAGAGAGCTTCCACAGATAATAGAAGACAATGTGGAGAATTTCTGCAAG 894
Query 901 AAGCTAATAGGAAAAGCGGGACTGGCTCATAAGAACTATAACCAGATGTTCTGGGCGGTT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AAGCTAATAGGAAAAGCGGGACTGGCTCATAAGAACTATAACCAGATGTTCTGGGCGGTT 954
Query 961 CATCCAGGTGGACCAGCCATTTTGAATCGGATGGAAAAGCGGCTTAACCTGTCGCCTGAG 1020
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 955 CATCCAGGTGGACCAGCCATCTTGAACCGGATTGAAAAGCGGCTTAACCTGTCGCCTGAG 1014
Query 1021 AAGCTGAGTCCAAGCAGAAGAGCTCTCATGGACTATGGCAATGCGAGCAGCAATTCAATT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AAGCTGAGTCCAAGCAGAAGAGCTCTCATGGACTATGGCAATGCGAGCAGCAATTCAATT 1074
Query 1081 GTTTATGTGTTGGAGTATATGTTGGAGGAGAGCAAGAAAGTGAGGAACATGAATGAAGAA 1140
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GTTTATGTGCTGGAGTATATGTTGGAGGAGAGCAAGAAAGTGAGGAACATGAATGAAGAA 1134
Query 1141 GAAAACGAGTGGGGTCTGATTCTGGCTTTTGGACCTGGTGTTACATTTGAAGGCATCATC 1200
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1135 GAAAACGAGTGGGGTCTGATTCTTGCTTTTGGACCTGGTGTTACATTTGAAGGCATTATC 1194
Query 1201 GCTAGAAACCTTGATGTCTGAACAATAAAGTGAAAGGTTTACCTTGCAGATCAAGAAAGA 1260
||| |||||||||||||||||||||||| || ||||||||||||||| |||||||
Sbjct 1195 GCTCGAAACCTTGATGTCTGAACAATAA-GTT-----TTTACCTTGCAGATCGAGAAAGA 1248
Query 1261 ACCCCTTCTTTGCTATAATAAAGACATGAAGCTAAACATACGAAATATTTTTTACGATGC 1320
||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 ACCCCTTAT--GCTTTAATAAAGACATGAAGCTAAACATACGAAATATTTTTTACGATGC 1306
Query 1321 TTAAATCTTT 1330
||||||||||
Sbjct 1307 TTAAATCTTT 1316
> AT4G34860.1 | Symbols: | Plant neutral invertase family protein
| chr4:16609746-16612907 REVERSE LENGTH=2330
Length=2330
Score = 119 bits (64), Expect = 8e-26
Identities = 73/77 (95%), Gaps = 2/77 (3%)
Strand=Plus/Minus
Query 1254 AGAAAGAACCCCTTCTTTGCTATAATAAAGACATGAAGCTAAACATACGAAATATTTTTT 1313
|||||||||||| | | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2329 AGAAAGAACCCC-T-TATGCTTTAATAAAGACATGAAGCTAAACATACGAAATATTTTTT 2272
Query 1314 ACGATGCTTAAATCTTT 1330
|||||||||||||||||
Sbjct 2271 ACGATGCTTAAATCTTT 2255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65461510680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5