BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491178
Length=605
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34770.1 | Symbols: | SAUR-like auxin-responsive protein fa... 898 0.0
> AT4G34770.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr4:16591229-16591892 FORWARD LENGTH=664
Length=664
Score = 898 bits (486), Expect = 0.0
Identities = 570/609 (94%), Gaps = 11/609 (2%)
Strand=Plus/Plus
Query 1 TCATCACCTAAAAAGTTTTTTCAAAATCTCCCTTTTTAGTCACTTGCATTGA-TCCTCAA 59
||| ||||||||||||| |||||||||||||||| ||| ||| ||||||| | |||||||
Sbjct 63 TCACCACCTAAAAAGTTCTTTCAAAATCTCCCTTCTTACTCATTTGCATT-AGTCCTCAA 121
Query 60 AGATGGGTATCCAATTGATCGGACTATCTCAAGCAAAGCAAAAGCTTCAAAGAAGCTTAT 119
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 122 AGATGGGTATCCAATTGATCGGACTCTCTCAGGCAAAGCAAAAGCTTCAAAGAAGCTTAT 181
Query 120 CGGCAAGAATCGCAAGTCTCTTGGCTACGTCGGGTACTAATAATGTCCCAAAGGGTCATG 179
| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CAGCGAGAATCGCAAGCCTCTTGGCTACGTCGGGTACTAATAATGTCCCAAAGGGTCATG 241
Query 180 TGGCCGTCTATGTTGGG-GAGACTTATCAAATGAAGAGATTTGTGATACCTATATCGTAT 238
||||||||||||| ||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 242 TGGCCGTCTATGT-GGGAGAGACTTATCACAGGAAGAGATTTGTGATACCTATATCGTAT 300
Query 239 CTAAACCATCCACTGTTCCAAGGTTTGTTGAACCTTGCGGAAGAAGAGTTCGGGTTTGAC 298
||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 301 TTAAACCACCCATTGTTCCAAGGTTTGTTGAACCTCGCGGAAGAAGAGTTCGGGTTCGAC 360
Query 299 CATCCCATGGGAGGTCTCACCATCCCTTGCACTGAAGATTACTTCACTGCTCTAGCTTCG 358
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 CATCCCATGGGAGGTCTCACCATCCCTTGCACTGAAGATTACTTCACCGCTCTAGCTTCT 420
Query 359 ATTCTAAGTGGTTCATGATAAGGGAGCTAGCTCACTGATCATCACAATATTCATTAGGTT 418
|||||||||||||||||||||||||||| | | |||||||||||| |||||||| |||
Sbjct 421 ATTCTAAGTGGTTCATGATAAGGGAGCT--C--ATTGATCATCACAACATTCATTAAGTT 476
Query 419 TCTTTATACAAATCTTTGTGTTTCTCTTAAAATGTATTTAAGTGG--AGAGAAAATAACT 476
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 477 TCTTTATACAAATCTTTGTGTTTCTCTTAAAATGTATTTAAGGGGGGAGAGAAAATAACT 536
Query 477 CGAGACTGAGATACTAAGTGAGTCTCTTTCAAATTTTGATCAAAAATGATCGTGTGAGTT 536
||||||||||| |||||||||||||||||||| |||||||| ||||||||| ||||||||
Sbjct 537 CGAGACTGAGAAACTAAGTGAGTCTCTTTCAATTTTTGATCTAAAATGATCTTGTGAGTT 596
Query 537 CTTTTTAACCATTCCATTTGTAAAGAATTCACTTTCTGAAAAATTAATCTATGATTCTTT 596
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 597 CTTTT-AACCATTCCATTTGTAAAGAATTCACTATCTGAAAAATTAATCTATGATTCTTT 655
Query 597 TTGTCCATT 605
|||||||||
Sbjct 656 TTGTCCATT 664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29135805260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5