BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491179
Length=658
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34760.1 | Symbols: | SAUR-like auxin-responsive protein fa... 749 0.0
AT2G16580.1 | Symbols: | SAUR-like auxin-responsive protein fa... 313 2e-84
> AT4G34760.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr4:16582183-16582879 REVERSE LENGTH=697
Length=697
Score = 749 bits (405), Expect = 0.0
Identities = 451/471 (96%), Gaps = 12/471 (3%)
Strand=Plus/Plus
Query 1 CCACCCATCTCCTTCTCCATAActctctctctctctctcCCTAAACACAACCAAAAG-CT 59
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||
Sbjct 2 CCACCCATCTCCTTCTCCATAA--CTCTCTCTCTCTCTCCCTAAACACAACC-AAAGACT 58
Query 60 TTTATCTCTCAAGAA-CCCAAAAACAAATGGCTATAATAAAGAAAACTTCAAAACTCACT 118
||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 59 TTTATCTCTCAGGAACCCCAAAAACAAATGGCTATAATGAAGAAAACTTCAAAACTCACT 118
Query 119 CAAACAGCAATGCTGAAGCAGATTCTGAAGAGATGCTCGAGCTTAGGGAAGAAGAATGGA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CAAACAGCAATGCTGAAGCAGATTCTGAAGAGATGCTCGAGCTTAGGGAAGAAGAATGGA 178
Query 179 GGAGGGTACGATGAAGATTGCCTTCCACTTGACGTACCAAAGGGACACTTCCCTGTCTAT 238
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 179 GGAGGGTACGATGAAGATTGCCTTCCGCTTGACGTACCAAAGGGACACTTCCCTGTCTAT 238
Query 239 GTCGGAGAGAACAGAAGCAGATACATTGTCCCAATCTCCTTCTTGACTCATCCTGAGTTT 298
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 239 GTCGGAGAGAACAGAAGCAGATACATTGTCCCAATCTCCTTCTTGACACATCCTGAGTTC 298
Query 299 CAATCTCTCTTACAACGAGCCGAGGAAGAATTTGGATTCGACCACGACATGGGTCTCACC 358
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 299 CAATCTCTCTTACAACGAGCCGAGGAAGAATTTGGATTCGATCACGACATGGGTCTCACC 358
Query 359 ATTCCTTGTGATGAACTCGTTTTTCAAACCCTAACTTCCATGATCCGATGATATTTTAAG 418
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 359 ATTCCTTGTGATGAACTCGTTTTTCAAACCCTAACATCCATGATCCGATGATATTTTA-- 416
Query 419 TTAAATCATTTGAAGAAGAAGCAGAAGGAGATGGTTAAAGAAGAGGCGGAA 469
| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 417 T-----CATTTGAAGAAGAAGCAGAAGGAGATGGTTAAAGAAGAAGCGGAA 462
Score = 311 bits (168), Expect = 6e-84
Identities = 182/189 (96%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 470 TTTTTTCCTTTATTTTTAAGCCCATCTAGGGttttttttACGAGGTAATTGTCTCGTCTA 529
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 508 TTTTTTCCTTTATTTTTAAGCCCATCTAGGGTTTTTTTTACGAGTTAATTGACTCGTCTA 567
Query 530 ACTAGaaaaaaaTCCGTATGAGATAGAGATTCTATGGGTTTAGATATGTAAATAAAGTTT 589
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 568 ACTAGAAATAAATCCGTATGAGATAGAGATTCTATGGGTTTAGATCTGTAAATAAAGTTT 627
Query 590 GTAATGTTTTCCTCACAAATCTTAATTCTGTGAGAGAAGTTATTTAATGCAAGAGAAAGT 649
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 628 GTAATGTTTTCCTCACAGATCTTCGTTCTGTGAGAGAAGTTATTTAATGCAAGAGAAAGT 687
Query 650 ATTCCTCCG 658
|||||||||
Sbjct 688 ATTCCTCCG 696
> AT2G16580.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr2:7184422-7186968 REVERSE LENGTH=893
Length=893
Score = 313 bits (169), Expect = 2e-84
Identities = 297/357 (83%), Gaps = 16/357 (4%)
Strand=Plus/Plus
Query 64 TCTCTC-AAGAACCCAAAAAC--AAATGGCTATAATAAAGAAAACTTCAAAACTCACTCA 120
|||||| || ||| |||||| ||||| | || | |||||| || ||||||| ||||
Sbjct 16 TCTCTCAAACCACCAAAAAACAAAAATGTCCATTCTCAAGAAATCTACAAAACTGGCTCA 75
Query 121 AACAGCAATGCTGAAGCAGATTCTGAAGAGATGCTCGAGCTTAGGGAAGAAGAATGGAGG 180
|||||||||||| | |||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 76 AACAGCAATGCTTAGGCAGATTCTGAAGAGATGTTCAAGCTTGGGGAAGAAGAATGGAGG 135
Query 181 A-G-GG-TACGATGAAGATTG-CCTTCCACTTGACGTACCAAAGGGACACTTCCCTGTCT 236
| | || || || |||| ||| || |||||||| ||||| |||||||||||||||||||
Sbjct 136 AGGAGGATATGAAGAAG-TTGATCTCCCACTTGATGTACCCAAGGGACACTTCCCTGTCT 194
Query 237 ATGTCGGAGAGAACAGAAGCAGATACATTGTCCCAATCTCCTTCTTGACTC-ATCCTGAG 295
| || ||| | ||||||||||||||||| || || ||||| |||||||| | ||| |||
Sbjct 195 ACGTAGGACACAACAGAAGCAGATACATAGTTCCTATCTCTTTCTTGAC-CAATCTTGAC 253
Query 296 TTTCAATCTCT-CTTACAACGAGCCGAGGAAGAATTTGGATTCGACCACGACATGGGTCT 354
|| |||| ||| |||| || |||| |||||||| ||||| || || || |||||||||||
Sbjct 254 TTCCAATGTCTCCTTAGAA-GAGCTGAGGAAGAGTTTGGTTTTGATCATGACATGGGTCT 312
Query 355 CACCATTCCTTGTGATGAACTCGTT-TTTCAA-ACCCTAACTTCCATGATCCGATGA 409
|||||||||||||||||||||| || |||||| | | | ||||||||||||||||||
Sbjct 313 CACCATTCCTTGTGATGAACTC-TTCTTTCAAGATC-TGACTTCCATGATCCGATGA 367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31798215051
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5