BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491180
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34750.1 | Symbols: | SAUR-like auxin-responsive protein fa... 1092 0.0
> AT4G34750.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr4:16577482-16578452 FORWARD LENGTH=971
Length=971
Score = 1092 bits (591), Expect = 0.0
Identities = 799/889 (90%), Gaps = 56/889 (6%)
Strand=Plus/Plus
Query 1 CTCTCCAACTTTCCCTTCATTTTCTGGGGAATAGCGAGCC-AAAAACGCAGAAAGC-ATC 58
||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||| |||
Sbjct 1 CTCTCCAACTTTCCCTTCATTTTCTGGGGAAAAGCGAGCCAAAAAACGCA-AAAGCAATC 59
Query 59 CACAAGAAGCAATTGGTCGATATCAATGGGGAAGAACAATAAGATCGGAAGCGTTGTTCG 118
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CACAAGAAGCAATTGTTCGATATCAATGGGGAAGAACAATAAGATCGGAAGCGTTGTTCG 119
Query 119 GATCCGTCAGATGCTTAAACAATGGCAGAAAAAAGCTCACATCGGATCCAACAACAACGA 178
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 120 GATCCGTCAGATGCTTAAACAATGGCAGAAAAAAGCTCACATCGGATCTAGCAACAACGA 179
Query 179 TCCTGTTTCCGATGTACCTCCTGGTCACGTTGCTGTTTCCGTCGGTGAGAATCGTCAGAG 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 TCCTGTTTCCGATGTACCTCCTGGTCACGTTGCTGTTTCCGTCGGTGAGAATCGTCGGAG 239
Query 239 ATACGTTGTCCGTGCGAAGCATTTGAATCATCCGATCTTTC-GTCGGCTTCTCGCGGAGG 297
||||||||||||||| ||||||||||| |||||||| |||| | |||||||| || ||||
Sbjct 240 ATACGTTGTCCGTGCTAAGCATTTGAACCATCCGAT-TTTCCGACGGCTTCTAGCTGAGG 298
Query 298 CTGAGGAAGAGTACGGATTCGCTAACGTTGGTCCGTTAGCGATTCCTTGTGATGAATCGT 357
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CTGAGGAAGAGTATGGATTCGCTAACGTTGGTCCGTTAGCGATTCCTTGTGATGAATCGT 358
Query 358 TGTTTGAGGATATTATTGCGATTGTGAGTCGGAGTGAGTCGTCATC-TG----GG-CGAG 411
||||||||||||||||||||||||||| |||| ||||||||||||| | || ||||
Sbjct 359 TGTTTGAGGATATTATTGCGATTGTGACTCGGTGTGAGTCGTCATCATCATCTGGACGAG 418
Query 412 GTAATCC---GGAGGCGACGCTTGAGGATCTCCGGAGGTGTAGTCACGTCGGATTGGCGA 468
||||||| || ||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 419 GTAATCCTCCGGCGGCGACGCTTGAGGATCTCCGGAGGTGTAGTCATGTTGGATTGGCGA 478
Query 469 AGAGCAACGTTGAATCTCGGCCGTTGCTTCCTGGGATTACTGAAAAATCTGTCTGCTAAA 528
||| ||||||||||||||| ||||| |||||||||||| ||||||||||||| ||||||
Sbjct 479 AGAACAACGTTGAATCTCGTCCGTTACTTCCTGGGATTGCTGAAAAATCTGTGTGCTAAT 538
Query 529 CAAATTTGCAAACGGAATTTGGATTGAAGCTTTGGTTAGAGatttgcttttgaaagtttt 588
||||||||||||||||| || |||||| |||||||||||||||| |||||||||||||
Sbjct 539 GAAATTTGCAAACGGAATGTG-ATTGAAACTTTGGTTAGAGATTTAATTTTGAAAGTTTT 597
Query 589 ttatttaatttcgttgctaattttt--a-tgattct--a----gtttt-gGGAAGGAGAT 638
||||||||||||||||| ||||| | ||||| | | ||||| |||||||||||
Sbjct 598 A-ATTTAATTTCGTTGCTATTTTTTTTAATGATTTTTGACTTTGTTTTTGGGAAGGAGAT 656
Query 639 GGCAAAATTAGGGTTTGAT-T-GTTTTTGGTTGTCGTCGCCAGTGTCGTCGTCCCAGA-T 695
||||||||||||||||||| | |||||||||||||| | | ||||||||||||||||| |
Sbjct 657 GGCAAAATTAGGGTTTGATATTGTTTTTGGTTGTCG-C-C-AGTGTCGTCGTCCCAGAAT 713
Query 696 --TGA---T--GA--A-GGAGATAGTTTTTT-GGAGAG-G-AGCCCCTCAGTTTTTA-TT 741
||| | || | |||||||||||||| |||||| | ||||| |||||||||| ||
Sbjct 714 GATGAAGATTTGATGAAGGAGATAGTTTTTTTGGAGAGAGGAGCCC-TCAGTTTTTAATT 772
Query 742 TAGATATTTG-G-T-CA--T-GAGA--TTCTTATTTATATTTCTTTTGGCTATTTTCAAT 793
||||||||| | | | | |||| ||||||||||||||||| |||||||||||||||
Sbjct 773 TAGATATTTTTGATTCTGGTCGAGAGATTCTTATTTATATTTCTCTTGGCTATTTTCAAT 832
Query 794 T-GTATATTCAGATTTCTGAATTTTAACTGAGGAATAATAAATTAATTT 841
| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TTGTATATTCAGATTTCTGAATTTTAACTGAGGAATAATAAATTAATTT 881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40991063952
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5