BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491187
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34680.1 | Symbols: GATA3 | GATA transcription factor 3 | ch... 1544 0.0
> AT4G34680.1 | Symbols: GATA3 | GATA transcription factor 3 |
chr4:16553408-16554740 FORWARD LENGTH=1017
Length=1017
Score = 1544 bits (836), Expect = 0.0
Identities = 907/940 (96%), Gaps = 10/940 (1%)
Strand=Plus/Plus
Query 274 AGAGTTAATGGAGCTGTGGACAGAAGCTAAAGCCCTAAAGGCAAGTCTAAGAGGAGAATC 333
||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 71 AGAGTGAATGGAGCTGTGGACAGAAGCTAGAGCCTTAAAGGCAAGTCTAAGAGGAGAATC 130
Query 334 TACTACATCTCTCAAACATCACCAACTGATTGTGTCGGAAGATTTAAGCCGAACTTCTTC 393
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 131 TACTATATCTCTCAAACATCACCAAGTGATTGTGTCGGAAGATTTAAGCCGAACTTCTTC 190
Query 394 TTTGTCC-GAAGATTTTTCTGTTGAGTGTTTCCTCGATTTCTCAGAAGGTC--AAA-aag 449
||| || |||||||| || ||||||||||||||||||||||||||||||| ||| |||
Sbjct 191 CTTG-CCGGAAGATTTCTCCGTTGAGTGTTTCCTCGATTTCTCAGAAGGTCAAAAAGAAG 249
Query 450 aagaagaagaacttgtctctgtttcttcttcacaagaag-aacaagaacaagaacaagaT 508
||||||||||| |||||||||||||||||||||||| || || ||||||||||||| |||
Sbjct 250 AAGAAGAAGAAGTTGTCTCTGTTTCTTCTTCACAAG-AGCAAGAAGAACAAGAACATGAT 308
Query 509 TGTATCTTTAGTTCACAACCTTGCATCTTTGATCAACTTCCTTCTTTGCCGGATGAAGAT 568
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TGTGTCTTTAGTTCACAACCTTGCATCTTTGATCAACTTCCTTCTTTGCCGGATGAAGAT 368
Query 569 GTGGAAGAGCTTGAATGGGTATCTCGTGTTGTGGATGATTGTTCATCACCAGAAGTCTCA 628
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 369 GTGGAAGAGCTTGAATGGGTATCTCGTGTTGTGGATGATTGTTCATCACCAGAAGTTTCA 428
Query 629 CTTCTCTTAACACAAACCCACAAAACCAAACCAAGCTTCTCAAGAATTCCGGTTAAACCA 688
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 429 CTTCTCTTAACACAAACACATAAAACCAAACCAAGCTTCTCAAGAATTCCGGTTAAACCA 488
Query 689 AGAACCAAACGGTCTCGTAACAGTTTAACCGGTGGTCGTGTTTGGCCACTCGTTTCAACC 748
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 489 AGAACCAAACGGTCTCGGAACAGTTTAACCGGTAGTCGTGTTTGGCCACTCGTTTCAACC 548
Query 749 AATCATCAACATGCAGCAACAGAGCAGTTGAGGAAGAAGAAACAAGAAAC-GGCCGTTGT 807
|||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 549 AATCATCAACATGCAGCAACAGAGCAGTTGAGGAAGAAGAAACAAGAAACTGTCC-TTGT 607
Query 808 GTTTCAACGAAGATGCAGCCATTGTGGCACAAACAACACACCACAGTGGAGAACCGGTCC 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GTTTCAACGAAGATGCAGCCATTGTGGCACAAACAACACACCACAGTGGAGAACCGGTCC 667
Query 868 GGTCGGTCCAAAAACCTTATGTAATGCATGTGGAGTCCGGTTTAAGTCTGGTAGGCTCTG 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 GGTCGGTCCAAAAACCTTATGTAATGCATGTGGAGTCCGGTTTAAGTCTGGTAGGCTCTG 727
Query 928 CCCGGAATACAGACCGGCGGATAGTCCGACGTTCTCTAATGAGATTCACTCGAATCTACA 987
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 728 CCCGGAATACAGACCGGCGGATAGTCCGACGTTCTCGAATGAGATTCACTCAAATCTTCA 787
Query 988 TAGGAAGGTTCTGGAATTGAGAAAGAGTAAAGAGTTGGGTGAAGAAACAGGTGAAGCTAG 1047
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TAGGAAGGTTCTGGAATTAAGAAAGAGTAAAGAGTTGGGTGAAGAAACAGGTGAAGCTAG 847
Query 1048 TACTAAATCAGACCAAGTCAAATTTGGCAGCAAGTGGTAGATAAGACTTAGGTAAAACCT 1107
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TACTAAATCAGACCCAGTCAAATTTGGCAGCAAGTGGTAGATAAGACTTAGGTAAAACCT 907
Query 1108 ACTTTTTGTAACATTATCTGTAGTGTTGTAATTTAACAACTTGCTTCTTAACATTT-GAA 1166
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 908 ACTTTTTGTAACATTATCTGTAGTGTTGTAATTTAACAACTTGCTTCTTAACATTTTGAA 967
Query 1167 ACTGTTTCAGGAACTAGTCTTAAGTAAACAATGGTTTTCT 1206
||||||||||||||||||||||||||||||||||||||||
Sbjct 968 ACTGTTTCAGGAACTAGTCTTAAGTAAACAATGGTTTTCT 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5