BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491188
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34670.1 | Symbols: | Ribosomal protein S3Ae | chr4:1654861... 1657 0.0
AT3G04840.1 | Symbols: | Ribosomal protein S3Ae | chr3:1329665... 828 0.0
> AT4G34670.1 | Symbols: | Ribosomal protein S3Ae | chr4:16548618-16550453
FORWARD LENGTH=1126
Length=1126
Score = 1657 bits (897), Expect = 0.0
Identities = 995/1040 (96%), Gaps = 15/1040 (1%)
Strand=Plus/Plus
Query 1 AAATGAAAAGCCAGTGAATTAGGGCTTTCTCTCAATTGTTGAAGCCGCTTCTTCTTCTTC 60
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1 AAATGAAAAGCCAGTGAATTAGGGCTTTCTCTCACTTGTTGAAGCCG---CTTCTTCTTC 57
Query 61 TTCCTCACTGTAGCTCGTCGTCGCTACACCATCT-GAAGACCCTTAACCATGGCTGTCGG 119
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 58 TTCCTCACTGTAGCTCGTCGTCGCTACACCATCTAGAAGACCCTTAACCATGGCTGTCGG 117
Query 120 GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGCTGTTGATCCTTT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 118 GAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGGCTGTTGATCCCTT 177
Query 180 CTCCAAGAAGGATTGGTATGACGTGAAGGCTCCTGCTTCATTCACCCACAGGAATGTTGG 239
||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 178 CTCCAAGAAGGATTGGTATGACGTGAAGGCTCCTGGTTCTTTCACGAACAGGAATGTTGG 237
Query 240 CAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGATTGCCTCTGAGGGACTGAAACACAG 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGATTGCCTCTGAGGGACTGAAACACAG 297
Query 300 GGTTTTTGAGGTTTCTCTTGCTGATTTACAAAAAGATGAGGATAATGCCTACAGGAAGAT 359
||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 298 GGTGTTTGAGGTTTCTCTTGCTGATCTACAAAATGATGAGGATAATGCCTACAGGAAGAT 357
Query 360 CCGTCTTAGAGCTGAAGATGTTCAGGGAAGGAATGTGTTGACCCAGTTCTGGGGTATGGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CCGTCTTAGAGCTGAAGATGTTCAGGGAAGGAATGTGTTGACCCAGTTCTGGGGTATGGA 417
Query 420 TTTCACAACCGACAAGCTAAGGTCTTTGGTCAAGAAGTGGCAGACTTTGATTGAAGCCCA 479
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 418 TTTCACAACCGACAAGCTAAGGTCATTGGTGAAGAAGTGGCAGACTTTGATTGAAGCCCA 477
Query 480 TGTCGATGTGAAAACCACTGACGGCTACACCTTGAGGCTGTTCTGCATCGCCTTCACAAA 539
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 478 TGTCGATGTGAAAACCACAGACGGCTACACCTTGAGGATGTTCTGCATCGCCTTCACAAA 537
Query 540 GAGACGTGCTAACCAAGTGAAGCGTACTTGTTATGCTCAATCCAGCCAAATCCGTCAGAT 599
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 538 GAGACGTGCTAACCAAGTGAAGCGTACCTGTTACGCTCAATCCAGCCAAATCCGTCAGAT 597
Query 600 CCGCAGAAAGATGAGTGAGATTATGGTGAAGGAGGCTTCATCTTGTGACCTCAAGGAGCT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CCGCAGAAAGATGAGTGAGATTATGGTGAAGGAGGCTTCATCTTGTGACCTCAAGGAGCT 657
Query 660 TGTGGCCAAGTTCATCCCAGAGGCCATTGGAAGAGAGATTGAGAAGGCAACACAGGGCAT 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGTGGCCAAGTTCATCCCAGAGGCCATTGGAAGAGAGATTGAGAAGGCAACACAGGGCAT 717
Query 720 CTACCCGTTGCAAAATGTGTTCATCCGTAAAGTGAAGATCCTAAAGGCTCCCAAGTTTGA 779
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTACCCGTTGCAGAATGTGTTCATCCGTAAAGTGAAGATCCTAAAGGCTCCCAAGTTTGA 777
Query 780 CCTTGGAAAGCTCATGGAGGTGCATGGAGATTACACAGCCGAGGATGTTGGTGTGAAGGT 839
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 778 CCTTGGAAAGCTCATGGAGGTGCATGGAGATTACACAGCAGAGGATGTTGGTGTGAAGGT 837
Query 840 AGACAGGCCAGCTGATGAAACAATGGCTGAGGAACCAACAGAAATCATCGGAGCTTAGAG 899
|||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| |
Sbjct 838 AGACAGGCCAGCTGATGAGACAATGGTTGAGGAGCCAACAGAAATCATCGGAGCTTAGGG 897
Query 900 AAATATAGATTTGTTTGTTTTT-CGCTGGCaaaaaaaaaa--GAACCTAATGTTATGTCG 956
| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 898 GATTATAGATTTGTTTGTTTTTTCGCTGGCAAAAAAAAAAAAGAACCTAATGTTATGTCG 957
Query 957 CCTTTTGTGTGACTGGTTTTGGATTCGTTTTTGATGGATATCTATAACTCTCTTATTGTT 1016
|| || ||||||||||||||||| ||||||||||||||| || || | | ||||||
Sbjct 958 CCATTGGTGTGACTGGTTTTGGACTCGTTTTTGATGGATG---AT--CT-T-T-ATTGTT 1009
Query 1017 TATCATGTGTTACCTTTTTT 1036
|||||||| |||||||||||
Sbjct 1010 TATCATGTTTTACCTTTTTT 1029
> AT3G04840.1 | Symbols: | Ribosomal protein S3Ae | chr3:1329665-1331617
FORWARD LENGTH=1074
Length=1074
Score = 828 bits (448), Expect = 0.0
Identities = 691/807 (86%), Gaps = 21/807 (3%)
Strand=Plus/Plus
Query 107 CCATGGCTGTCGGGAAGAACAAGAGGATTTCAAAGGGTAGGAAAGGAGGAAAGAAGAAGG 166
||||||| |||||||| |||||||| || || ||||||||||| ||||||||||||||||
Sbjct 85 CCATGGCCGTCGGGAAAAACAAGAGAATCTCTAAGGGTAGGAAGGGAGGAAAGAAGAAGG 144
Query 167 CTGTTGATCCTTTCTCCAAGAAGGATTGGTATGACGTGAAGGCTCCTGCT-TCATTCACC 225
|||||||||||||||||||||| ||||||||||| || ||||||||| | || |||||
Sbjct 145 CTGTTGATCCTTTCTCCAAGAAAGATTGGTATGATGTTAAGGCTCCTTCAATC-TTCACT 203
Query 226 CACAGGAATGTTGGCAAGACTCTTGTTTCCAGGACTCAGGGTACCAAGATTGCCTCTGAG 285
|||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| ||
Sbjct 204 CACAGGAATGTTGGAAAGACACTTGTTTCCAGAACTCAGGGTACCAAAATTGCCTCAGAA 263
Query 286 GGACT-GAAACACAGGGTTTTTGAGGTTTCTCTTGCTGAT-TTACAAAAAGATGAGGATA 343
|| || ||||||||| |||||||||||||||||||||||| || ||| ||||||||||
Sbjct 264 GG-CTTGAAACACAGAGTTTTTGAGGTTTCTCTTGCTGATCTT-CAAGGTGATGAGGATA 321
Query 344 ATGCCTACAGGAAGATCCGTCTTAGAGCTGAAGATGTTCAGGGAAGGAATGTGT-TGACC 402
| || ||||||||||||||||| |||||||||||||| ||||| ||||| || | || |
Sbjct 322 ACGCTTACAGGAAGATCCGTCTCAGAGCTGAAGATGTCCAGGGCAGGAACGT-TCTGTGC 380
Query 403 CAGTTCTGGGGTATGGATTTCACAACCGACAAGCTAAGGTCTTTGGTCAAGAAGTGGCAG 462
|| |||||||| ||||| ||||| ||||| || || ||||| ||||| ||||||||||||
Sbjct 381 CAATTCTGGGGCATGGACTTCACCACCGATAAACTTAGGTCATTGGTTAAGAAGTGGCAG 440
Query 463 ACTTTGATTGAAGCCCATGTCGATGTGAAAACCACTGACGGCTACAC-CTTGAGGCTGTT 521
||||||||||| || ||||| ||||| |||||||| ||| | ||||| || ||||| ||
Sbjct 441 ACTTTGATTGAGGCTCATGTTGATGTTAAAACCACCGACAGTTACACTCTC-AGGCTATT 499
Query 522 CTGCATCGCCTTCACAAAGAGACGTGCTAACCAAGTGAAGCGTACTTGTTATGCTCAATC 581
||| ||||||||||| ||||||||||||||||| || ||| | ||||| || ||||||||
Sbjct 500 CTGTATCGCCTTCACCAAGAGACGTGCTAACCAGGTCAAGAGGACTTGCTACGCTCAATC 559
Query 582 CAGCCAAATCCGTCAGATCCGCAGAAAGATGAGTGAGATTATGGTGAAGGAGGCTTCATC 641
|||||||||||||||||||||||| |||||||| || || ||||| | ||| ||||| ||
Sbjct 560 CAGCCAAATCCGTCAGATCCGCAGGAAGATGAGGGACATCATGGTTAGGGAAGCTTCCTC 619
Query 642 TTGTGACCTCAAGGAGCTTGTGGCCAAGTTCATCCCAGAGGCCATTGGAAGAGAGATTGA 701
|||||||| ||||| ||||| || |||||||| || || || ||||| || ||||||||
Sbjct 620 ATGTGACCTTAAGGATCTTGTTGCTAAGTTCATTCCTGAAGCTATTGGCAGGGAGATTGA 679
Query 702 GAAGGCAACACAGGGCATCTACCCG-TTGCAAAATGTGTTCATCCGTAAAGTGAAGATCC 760
||||||||| |||||||||||||| || || ||||| |||||||||||||| |||||||
Sbjct 680 GAAGGCAACTCAGGGCATCTACCCTCTT-CAGAATGTTTTCATCCGTAAAGTCAAGATCC 738
Query 761 TAAAGGCTCCC-AAGTTTGACCTTGGAAAGCTCATGGAGGTGCATGGAGATTACACAGCC 819
| ||||| ||| || || |||||||| ||||||||||| || || ||||||||| ||||
Sbjct 739 TCAAGGC-CCCTAAATTCGACCTTGGCAAGCTCATGGATGTTCACGGAGATTACTCAGCA 797
Query 820 GAGGATGTTGGTGTGAAGGTAGACAGGCCAGCTGATGAAACAATGGCTG---AGGAACCA 876
|| ||||||||||| |||||||||||||| |||||||| | |||||| |||||||
Sbjct 798 GAAGATGTTGGTGTTAAGGTAGACAGGCCGGCTGATGAGA---TGGCTGTTGAGGAACCT 854
Query 877 ACAGAAATCATCGGAGCTTAGAGAAAT 903
|| ||||||||||||||||| ||||||
Sbjct 855 ACTGAAATCATCGGAGCTTA-AGAAAT 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50786722617
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5