BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491189
Length=1616
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34660.1 | Symbols: | SH3 domain-containing protein | chr4:... 2451 0.0
> AT4G34660.1 | Symbols: | SH3 domain-containing protein | chr4:16545197-16548453
REVERSE LENGTH=1664
Length=1664
Score = 2451 bits (1327), Expect = 0.0
Identities = 1554/1656 (94%), Gaps = 46/1656 (3%)
Strand=Plus/Plus
Query 1 AAATTTGTGCTGAGCTCAACGCCATTTTTGACGATTTCGAATCTCTTTCTTCTCTGAATT 60
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 8 AAATTTGTTCTGAGCTCAACGCCATTTTTGACGATTTCGAATCTCTGTCTTCTCTGAGTT 67
Query 61 GTTCCAAGTAACCGGAGGTAACTCGT--A----AAG--T----------G-GAA-GAAGA 100
||||||||||| |||||| ||||||| | ||| | | ||| |||||
Sbjct 68 GTTCCAAGTAATCGGAGGGAACTCGTAAAGTGGAAGAATAGGAGAAAGAGAGAAGGAAGA 127
Query 101 AGATTTGCGAAGAGCTCTTGATCTGGTGAACAATGGATGCAATTAGAAAACAAGCTAGCA 160
||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 128 AGATTTGTGAATAGCTCTTGATCTGGTGAAGAATGGATGCAATTAGAAAACAAGCTAGCA 187
Query 161 GGTTGAGAGAACAAGTTGCGAGACAGCAACAGGCTGTGTTCAAGCAATTTGGAGGAGGAG 220
|||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |
Sbjct 188 GGTTGAGAGAACAAGTTGCGAGACAGCAGCAGGCTGTCTTTAAGCAATTTGGAGGAGGGG 247
Query 221 GATATGGCTCTGGTTTAGCTGATGAAGCAGAACTCAATCAGCATCAGAAGCTAGAAAAGC 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 GATATGGCTCTGGTTTAGCTGATGAAGCAGAACTCAATCAGCATCAGAAGCTAGAAAAGC 307
Query 281 TTTACATATCCACTCGTGCTGCCAAGCATTACCAAAGAGATATTGTTCGTGGTGTGGAAG 340
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 308 TTTACATATCCACTCGTGCTGCTAAGCATTACCAAAGAGATATTGTTCGTGGTGTGGAAG 367
Query 341 GTTATATAGTCACTGGGTCAAAACAAGTTGAAATAGGGACGAAATTGTCTGAGGATAGCA 400
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 368 GTTATATAGTTACAGGGTCAAAACAAGTTGAAATAGGTACGAAATTGTCTGAGGATAGCA 427
Query 401 GGAAATATGGTTCAGAGAATACATGTACGAATGGTAACGTATTAACACGGGCTGCACTGA 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GGAAATATGGTTCAGAGAATACATGTACGAATGGTAACGTATTAACACGGGCTGCACTGA 487
Query 461 ACTATGGGCGAGCTCGCGCACAAATGGAGAAGGAGCGTGGAAATATGTTGAAGGCTCTCG 520
|||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 488 ACTATGGGCGTGCTCGAGCACAAATGGAGAAGGAACGTGGAAATATGTTGAAGGCTCTTG 547
Query 521 GTACACAGGTTGCTGAGCCATTACGGGCAATGGTTTTGGGAGCTCCATTGGAGGATGCTA 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 GTACACAGGTTGCTGAGCCATTACGGGCAATGGTTTTGGGAGCTCCATTGGAGGATGCTA 607
Query 581 GACATCTAGCTCAACGCTATGACAGAATGCGCCAAGAAGCCGAAGCTCAGGCTACAGAAG 640
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 608 GACATCTTGCTCAACGCTATGACAGAATGCGCCAAGAAGCTGAAGCTCAGGCTACAGAAG 667
Query 641 TTGCCAGACGCCAAGCAAAGGCGAGAGAGTCTCAAGGTAATCCTGACATCTTGATGAAAC 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 TTGCCAGACGCCAAGCAAAGGCGAGAGAGTCTCAAGGTAATCCTGACATCTTGATGAAAC 727
Query 701 TGGAATCTGCTGAAGCAAAACTTCAAGACCTAAAATCAAATATGACAATATTGGGGAAAG 760
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 728 TGGAATCTGCTGAAGCAAAACTTCACGACCTAAAATCAAATATGACAATATTGGGGAAAG 787
Query 761 AAGCTGCTTCAGCTTTAGCTTCCGTTGAAGATCAACAACAAAAATTGACTCTTGAACGAC 820
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 788 AAGCTGCTTCTGCTTTAGCTTCCGTTGAAGATCAACAACAGAAATTGACTCTTGAACGAC 847
Query 821 TTCTCTCAATGGTTGAATCTGAGCGTGCTTACCATCAAAGAGTCCTCCAAATACTTGATC 880
|||| ||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 848 TTCTTTCAATGGTTGAATCTGAACGCGCCTACCATCAAAGAGTCCTCCAAATACTTGATC 907
Query 881 AGCTCGAAGGAGAGATGGTGTCTGAGAGGCAACGTATAGAAGCTCCCTCTACTCCCTCAA 940
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 908 AGCTCGAAGGAGAGATGGTATCTGAGAGGCAACGTATAGAAGCTCCCTCTACTCCCTCAA 967
Query 941 GCGCAGACAGTATGCCACCACCTCCATCATATGAGGAAGCTAATGGAGTGTTTGCATCTC 1000
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 GCGCAGACAGTATGCCGCCACCTCCATCATATGAGGAAGCTAATGGAGTGTTTGCATCTC 1027
Query 1001 AGATGCATGACACGTCAACAGATAGCATGGGTTACTTCTTAGGAGAGGTTTTGTTCCCAT 1060
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1028 AGATGCATGACACGTCAACAGATAGCATGGGTTACTTCTTAGGAGAGGTCTTGTTCCCAT 1087
Query 1061 ATCACGGTGTGACAGATGTCGAGCTCAGCTTATCAACTGGTGAATACGTTGTTGTTAGAA 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 ATCACGGTGTGACAGATGTCGAGCTCAGCTTATCAACTGGTGAATACGTTGTTGTTAGAA 1147
Query 1121 AGGTTATAGGCAGTGGATGGGCCGAAGGTGAATGCAAAGGCAAAGCTGGTTGGTTCCCTT 1180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 AGGTTACAGGCAGTGGATGGGCCGAAGGTGAATGCAAAGGCAAAGCTGGTTGGTTCCCTT 1207
Query 1181 ATGATTACATTGAAAGACGGGAACGAGTTCTTGCTAGCAAAGTGTCCGAAGTTTTCTGAG 1240
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 ATGGGTACATTGAAAGACGGGAACGAGTTCTTGCTAGCAAAGTGTCCGAAGTTTTCTGAG 1267
Query 1241 AATTCGAAGGTAACATC--G-TTCTTTGTTGGTTATGGAATTGAGTTGCTTCTGTAGAAG 1297
|||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1268 AATTTGAAGGTAACATTATGGTTCTTTGTTGGTTATGGAATTGAGTTGCTTCTGTAGAAG 1327
Query 1298 AGTTGTGTGTGTTCTGTAGAAAGAAAAAGAAAGAGAAGATTCACCAGCTAAAGCAGAAGT 1357
|||||||||| | |||||||| |||||||||||| ||||||||| |||||| |||||||
Sbjct 1328 AGTTGTGTGT-T-CTGTAGAA-GAAAAAGAAAGAAAAGATTCACGGGCTAAAACAGAAGT 1384
Query 1358 CCATATACATGAGGATCAGAGTTGATGTGGGTTTCTGCGATGTTCTGAATTTAGTAGTGA 1417
|||||| |||||||||||||||||||| |||||||||| ||||||||||| || ||||||
Sbjct 1385 CCATATGCATGAGGATCAGAGTTGATGCGGGTTTCTGCCATGTTCTGAATCTAATAGTGA 1444
Query 1418 TACCACTTGAACAAGAGTTCAGTTTTTAGGTATTATCT-CAATATTTGATTTGGATCTTC 1476
| |||||||||||||||||||||||||||||||||||| || |||| ||||||||| ||
Sbjct 1445 TGCCACTTGAACAAGAGTTCAGTTTTTAGGTATTATCTTCA-TATTGGATTTGGATATTT 1503
Query 1477 TCTTTGGCATTTGATGTAATCGCCAAATCTCTGTTTATCTTCATATGTGAATTCACTTCt 1536
|||||| |||||||||||| ||||| |||||||||||||||| ||||||||| |||||||
Sbjct 1504 TCTTTGTCATTTGATGTAAACGCCACATCTCTGTTTATCTTCGTATGTGAATACACTTCT 1563
Query 1537 ttt----t-tt-tttGT----------CCAA-TCTACTTTCATTTGATAACCTTGAAACT 1579
||| | || ||||| |||| | ||||||||||||||||||||||||||
Sbjct 1564 TTTCGGGTCTTATTTGTGATTTTTTGTCCAAAT-TACTTTCATTTGATAACCTTGAAACT 1622
Query 1580 TGATGAAGAAGTGATTATTTTTCAAGTTTACGCAAA 1615
||||||||||||||||||||||||| ||||||||||
Sbjct 1623 TGATGAAGAAGTGATTATTTTTCAAATTTACGCAAA 1658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79818866550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5