BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491190
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34650.1 | Symbols: SQS2 | squalene synthase 2 | chr4:165423... 2039 0.0
AT4G34640.1 | Symbols: SQS1, ERG9 | squalene synthase 1 | chr4:... 1197 0.0
> AT4G34650.1 | Symbols: SQS2 | squalene synthase 2 | chr4:16542377-16545121
FORWARD LENGTH=1448
Length=1448
Score = 2039 bits (1104), Expect = 0.0
Identities = 1231/1293 (95%), Gaps = 6/1293 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAGCTTGAGTACGATTTTGAGACACCCGGATGAGTTATATCCGCTCTTGAAGTTG 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGCTTGAGTACGATTTTGAGACATCCGGATGAGTTATATCCGCTCTTGAAGTTG 60
Query 61 AAACTTGCGATTACGAAAGCTCAGAAGCAGATCCCACTAGAGCCACACTTAGCTTTCTGT 120
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 61 AAACTTGCGATTACGAAAGCTCAGAAGCAGATTCCACTTGAGCCACACTTAGCTTTCTGT 120
Query 121 TATTCAATGCTCCACAAAGTTTCTAAAAGCTTTTCTCTTGTTATTCAACAACTTGGCACC 180
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATTCAATTCTTCACAAAGTTTCTAAAAGCTTTTCTCTTGTTATTCAACAACTTGGCACC 180
Query 181 GAGCTTCGTAACGCAGTGTGTGTGTTCTACTTGATTCTCCGAGCTCTTGATACTGTTGAG 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGCTTCGTAACGCCGTGTGTGTGTTCTACTTGATTCTCCGAGCTCTTGATACTGTTGAG 240
Query 241 GATGACACAAGCATACCAATGGAAACCAAAGTTCCAATTCTGATAGCTTTCCACCGTCAC 300
|||||||||||| ||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct 241 GATGACACAAGCGTACCAGTGGAGATCAAAGTTCCAATTCTGATAGCTTTCCACCGTCA- 299
Query 301 T-TATACGATGGTGGCTGGCATTTCTCATGTGGTACAAAAGATTACAAAGTTCTAATGGA 359
| |||||||||||| ||||||||| ||||||||||||||||| || ||| ||||||||||
Sbjct 300 TATATACGATGGTGACTGGCATTTTTCATGTGGTACAAAAGAGTATAAACTTCTAATGGA 359
Query 360 CCAATTTCACCATGTTTCTGCAGCTTTTCTGGAACTTGAAAAAGGGTATCAAGAGGCTAT 419
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 360 CCAATTTCACCATGTTTCTGCAGCTTTTCTGAAACTTGAAAAAGGGTATCAAGAGGCTAT 419
Query 420 TGAAGATATAACTAAAAGAATGGGTGCAGGAATGGCCAAGTTCATTTGCAAGGAGGTAGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGAAGATATAACTAAAAGAATGGGTGCAGGAATGGCCAAGTTCATTTGCAAGGAGGTAGA 479
Query 480 AACAATTGATGACTATGATGAATACTGCCATTATGCTGCAGGACTTGTGGGTTTAGGTTT 539
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 AACAATTGATGACTATGATGAATACTGCCATTATGCTGCAGGACTTGTTGGTTTAGGTTT 539
Query 540 GTCAAAAATCTTCATCGCTTCGGAATTGGAAATACTGACTCCAGATTGGAAGCAGATTTC 599
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 GTCAAAAATCTTCATTGCTTCGGAATTAGAAATACTGACTCCAGATTGGAAGCAGATTTC 599
Query 600 AAATTCTACAGGTTTATTTCTCCAGAAAACAAACATTATCAAAGATTATCTTGAAGACAT 659
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAATTCTACAGGTTTATTTCTGCAGAAAACAAACATTATCAAAGATTATCTTGAAGACAT 659
Query 660 TAATGAGATACCAAAATCGCGCATGTTTTGGCCTCGTGAGATTTGGGGGAAATATGTTGA 719
|||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 TAATGAGAGACCAAAGTCGCGCATGTTTTGGCCTCGTGAGATTTGGGGAAAATATGTTGA 719
Query 720 CAATCTCGAGGACTTAAAAAATGAGGAGAAATCAACACAAGCAGTGCAGTGTCTAAATGA 779
||| || |||||||| ||||||||||||||| | ||| |||||||||||||| | |||||
Sbjct 720 CAAACTTGAGGACTTCAAAAATGAGGAGAAAGCTACAAAAGCAGTGCAGTGTTTGAATGA 779
Query 780 AATGGTCACTAATGCGTTGACTCATGTTGAAGATTGTTTGAAATCATTGGCTTCATTGCG 839
||||||||||||||| |||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct 780 AATGGTCACTAATGCATTGAATCATGTTGAAGATTGTTTGAAATCCTTGGCTTCACTGCG 839
Query 840 TGATCCTGCAATATTTCAGTCTTGTGCCATCCCTCAGATCGTGGCGATTGGAACACTTAC 899
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 840 TGATCCTGCAATATTTCAGTCTTGCGCCATCCCTCAGATCGTGGCGATTGGAACACTTGC 899
Query 900 ATTATGCTATAACAATGTAAAAGTATTTAGAGGCGTCGTGAGACTGAGACGAGGTCTAAT 959
|||||||||||||||||| |||| |||||||| ||||||||| ||||||||||||||||
Sbjct 900 GTTATGCTATAACAATGTACAAGTGTTTAGAGGTGTCGTGAGATTGAGACGAGGTCTAAT 959
Query 960 AGCTAAAGTAATTGATCGCACAAAGACAATGGATGATGTCTATGGTGCGTTCTATGATTT 1019
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 960 AGCTAAAGTCATTGATCGCACAAAGACAATGGATGATGTCTACGGTGCGTTCTATGATTT 1019
Query 1020 TTCTTGCATGCTACAAACAAAGGTTGACAAGAACGATCCAAATGCCATGAAAACATTAAA 1079
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1020 TTCTTGCATGCTACAAACAAAGGTTGACAATAACGATCCAAATGCTATGAAAACATTAAA 1079
Query 1080 CCGACTCGAAACCATCAAGAAAGTTTGCAGAGAAAATGGAGTCCTTCACAAAAGAAAATC 1139
|||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||
Sbjct 1080 CCGACTCGAAACCATCAAGAAATTTTGCAAAGAAAATGGAGGACTTCACAAAAGAAAATC 1139
Query 1140 TTATGTTAACGATGAAACACAATCCAAGGCTATCTTTGTTGTAATGTTTGTGCTTCTACT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTATGTTAACGATGAAACACAATCCAAGGCTATCTTTGTTGTAATGTTTGTGCTTCTACT 1199
Query 1200 GGCCATAGTCGTTGTATATATATCTCGAAGCAAACCAACGTAAATGACTCTGATTGTGTG 1259
||||||||||||||||||| ||| ||||||||||| |||| ||||||||||| ||||
Sbjct 1200 GGCCATAGTCGTTGTATAT----CTCAAAGCAAACCAATGTAAGTGACTCTGATTTTGTG 1255
Query 1260 AAGTCATCATAAACATAATTTCTAGCTTCTTTG 1292
|||||||||| ||||||||||||||||| ||||
Sbjct 1256 AAGTCATCATGAACATAATTTCTAGCTTTTTTG 1288
> AT4G34640.1 | Symbols: SQS1, ERG9 | squalene synthase 1 | chr4:16538282-16541926
FORWARD LENGTH=1711
Length=1711
Score = 1197 bits (648), Expect = 0.0
Identities = 1052/1242 (85%), Gaps = 48/1242 (4%)
Strand=Plus/Plus
Query 1 ATGGGAAGCTTGAGTACGATTTTGAGACACCCGGATGAGTTATATCCGCTCTTGAAGTTG 60
||||| |||||| | ||||| ||||| | |||||||| ||||||||||| ||||| ||
Sbjct 208 ATGGGGAGCTTGGGGACGATGCTGAGATATCCGGATGACATATATCCGCTCCTGAAGATG 267
Query 61 AAACTTGCGATT-ACGAAAGCTCAGAAGCAGATCCC-ACTAGAGCCACACTTAGCTTTCT 118
|||| |||||| | |||||| ||||||||||||| || |||||||||| | |||||
Sbjct 268 AAACGAGCGATTGA-GAAAGCGGAGAAGCAGATCCCTCCT-GAGCCACACTGGGGTTTCT 325
Query 119 GTTATTCAATGCTCCACAAAGTTTCTAAAAGCTTTTCTCTTGTTATTCAACAACTTGGCA 178
| ||||| ||||||||||| |||||| |||||||||||| |||||||| ||||| ||
Sbjct 326 GCTATTCGATGCTCCACAAGGTTTCTCGAAGCTTTTCTCTCGTTATTCAGCAACTCAACA 385
Query 179 CCGAGCTTCGTAACGCAGTGTGTGTGTTCTACTTGATTCTCCGAGCTCTTGATACTGTTG 238
||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 386 CCGAGCTCCGTAACGCCGTGTGTGTGTTCTACTTGGTTCTCCGAGCTCTTGATACTGTTG 445
Query 239 AGGATGACACAAGCATACCAA-TGGAAACCAAA-GTTCCAATTCTGATAGCTTTCCACCG 296
||||||| || |||||||||| | | | ||| ||||| || ||||||||||| |||||
Sbjct 446 AGGATGATACTAGCATACCAACT-G-ATGAAAAGGTTCCCATCCTGATAGCTTTTCACCG 503
Query 297 TCACTTATACGATGGTGGCTGGCATT-TCTCATGTGGTACAAAAGATTACAAAG-TTCTA 354
||| |||||||| || ||||||| | ||||||||||| || || ||| ||| |||||
Sbjct 504 GCACATATACGATACTGATTGGCATTAT-TCATGTGGTACGAAGGAGTAC-AAGATTCTA 561
Query 355 ATGGACCAATTTCACCATGTTTCTGCAGCTTTTCTGGAACTTGAAAAAGGGTATCAAGAG 414
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 562 ATGGACCAATTTCACCATGTTTCTGCAGCTTTTTTGGAACTTGAAAAAGGGTATCAAGAG 621
Query 415 GCTATTGAAGATATAACTAAAAGAATGGGTGCAGGAATGGCCAAGTTCATTTGC-AAGGA 473
||||| || || || |||| ||||||||||||||| ||||||||||| || ||| ||| |
Sbjct 622 GCTATCGAGGAAATTACTAGAAGAATGGGTGCAGGGATGGCCAAGTTTATCTGCCAAG-A 680
Query 474 GGTAGAAACAATTGATGACTATGATGAATACTGCCATTATGCTGCAGGACTTGTGGGTTT 533
||||||||| |||||||||| |||||||||||||| |||| ||| || ||||| |||||
Sbjct 681 GGTAGAAACTGTTGATGACTACGATGAATACTGCCACTATGTTGCTGGGCTTGTTGGTTT 740
Query 534 AGGTTTGTCAAAAATCTTCATCGCTTC-GGAATTGGAAATACTGACTCCAGATTGGAAG- 591
||||||||| ||| ||||| ||||| | ||| | || | |||| ||||||||| ||
Sbjct 741 AGGTTTGTCGAAACTCTTCCTCGCTGCAGGA-TCAGAGGTTTTGACACCAGATTGGGAGG 799
Query 592 CAGATTTCAAATTCTACAGGTTTATTTCTCCAGAAAACAAACATTATCAAAGATTATCTT 651
| |||||| ||||| | ||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 800 C-GATTTCCAATTCAATGGGTTTATTTCTGCAGAAAACAAACATTATCAGAGATTATCTT 858
Query 652 GAAGACATTAATGAGATACCAAAATCGCGCATGTTTTGGCCTCGTGAGATTTGGGGGAAA 711
|| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 859 GAGGACATTAATGAGATACCAAAATCCCGCATGTTTTGGCCTCGCGAGATTTGGGGCAAA 918
Query 712 TATGTTGACAATCTCGAGGACTTAAAAAATGAGGAGAA-ATCAACACAAG-CAGTGCAGT 769
|||| |||||| || ||||| |||||| | |||||||| | ||| |||| | || ||||
Sbjct 919 TATGCTGACAAGCTTGAGGATTTAAAATACGAGGAGAACA-CAA-ACAAATCCGTACAGT 976
Query 770 GTCT-AAATGAAATGGTCACTAATGCGTTGACT-CATGTTGAAGATTGTTTGAAAT-CAT 826
| || |||||||||||| || |||||||||| | ||| |||||||||| |||||| |||
Sbjct 977 G-CTTAAATGAAATGGTTACCAATGCGTTGA-TGCATATTGAAGATTGCCTGAAATACAT 1034
Query 827 TGGCTTCATTGCGTGATCCTGCAATATTTCAGT-CTTGTGCCATCCCTCAGATCGTGGCG 885
|| ||| |||||||||||| | ||||||| || || ||||||||||||||||| |||||
Sbjct 1035 -GGTTTCCTTGCGTGATCCTTCCATATTTCGGTTCT-GTGCCATCCCTCAGATCATGGCG 1092
Query 886 ATTGGAACACTTACATTATGCTATAACAATGTAA-AAGTATTTAGAGGCGTCGTGAGACT 944
|||||||||||| |||||||||||||||||| || ||||||| |||||||| |||| |||
Sbjct 1093 ATTGGAACACTTGCATTATGCTATAACAATG-AACAAGTATTCAGAGGCGTTGTGAAACT 1151
Query 945 GAGACGAGGTCTAA-TAGCTAAAGTAATTGATCGCACAAAGACAATGGATGATGTCTATG 1003
||| |||||||| | | |||||||| |||||||| ||||||||||||| |||||||||||
Sbjct 1152 GAGGCGAGGTCTTACT-GCTAAAGTCATTGATCGTACAAAGACAATGGCTGATGTCTATG 1210
Query 1004 GTGCGTTCTATGATTTTTCTTGCATGCTACAA-ACAAAGGTTGACAAGAACGATCCAAAT 1062
|||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 1211 GTGCTTTCTATGATTTTTCCTGCATGCTG-AAGACAAAGGTTGACAAGAACGATCCAAAT 1269
Query 1063 GCCATGAAA-ACATTAAACCGACTCGAAACCAT-CAAGAAAGTTTGCAGAGAAAATGGAG 1120
|||| | || ||| |||||||||| ||| || | || |||| | |||||||| |||||
Sbjct 1270 GCCA-GTAAGACACTAAACCGACTTGAAGCCGTTCA-GAAACTCTGCAGAGACGCTGGAG 1327
Query 1121 TCCTTCACAAA-AGAAAATCTTATGTTAACGATGAAAC-ACAATCCAAG--GCTATCTTT 1176
| ||||| ||| ||||||||||||||||| || ||| |||| |||| | | |||||
Sbjct 1328 TTCTTCA-AAACAGAAAATCTTATGTTAATGAC-AAAGGACAA-CCAAACAG-TGTCTTT 1383
Query 1177 GTTGTAATGTTTGTGCTTCTACTGGCCATAGTCGTTGTATAT 1218
|| ||||| ||||| ||||||||||||||||| ||| ||||
Sbjct 1384 ATTATAATGGTTGTGATTCTACTGGCCATAGTCTTTGCATAT 1425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63553889970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5