BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491192
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34630.1 | Symbols: | unknown protein; Has 30 Blast hits to... 773 0.0
> AT4G34630.1 | Symbols: | unknown protein; Has 30 Blast hits
to 30 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa
- 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes
- 4 (source: NCBI BLink). | chr4:16536865-16537746 REVERSE
LENGTH=882
Length=882
Score = 773 bits (418), Expect = 0.0
Identities = 606/689 (88%), Gaps = 44/689 (6%)
Strand=Plus/Plus
Query 1 CAGTCTTGAAAAATCAAAGAAGCAACCACTTAACAA-A-ACAATTTGGAAAAATGGCGAA 58
||||||||||||||||||||||||||| || ||||| | ||||||| | ||||||||| |
Sbjct 4 CAGTCTTGAAAAATCAAAGAAGCAACCTCTAAACAACACACAATTTCG-AAAATGGCGCA 62
Query 59 TCGATCTAGGGTTATTACCATGTCTCCTCTCATTCTCAACCAGGAAGATGAAATCGAACT 118
|||||||||||||| |||||||||||||||||||| | ||| || ||| |
Sbjct 63 GCGATCTAGGGTTATCACCATGTCTCCTCTCATTCT----C-----GAT-CAA--GAAGT 110
Query 119 CGATCTCGATCTCTGGGAAGTCGTTAATCCTTCCGACGGCGATTTCTCCGAGGATTCTTT 178
|||||||||||||||||||| ||||||||||| || ||||| |||||||| ||||||||
Sbjct 111 TGATCTCGATCTCTGGGAAGTTGTTAATCCTTCTGATGGCGAGTTCTCCGACGATTCTTT 170
Query 179 CTCCGTCGATAGTCTTTCCGATGATGACGTCATATCTCTTGACGACGCTTCCTTTGTCTC 238
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 171 CTCCGTCGATAGTCTTTCCGACGATGACGTCATATCTCTTGACGACGCTTCCTTTGTCGC 230
Query 239 ACCGACTGTCATTTCTCCGCCGCCTGAGATAATTCCTGTTGCTGACGGTTGTGATCTCAC 298
||| |||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |
Sbjct 231 ACCCTCTGTCATTTCTCCGCCGCATGAGATAATTCCTATTGCTGACGGTGGTGATCTCGC 290
Query 299 CGTGGATCTGGATGGTGATG--G-TGTTGGGGATGATGTCGTCCGCGATGAAGTTGATGA 355
|||||||||||||||||||| | |||||| ||||||||||| |||||||||||||||||
Sbjct 291 CGTGGATCTGGATGGTGATGATGATGTTGGCGATGATGTCGTTCGCGATGAAGTTGATGA 350
Query 356 GAATGATCTTGGATGGGCTCAACGGCGGATGATGTTTCTCGGTGGAGGTTCTGGTTATTC 415
|||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 351 GAATGATCTTGGATGGTCTCAGCAGCGGATGATGTTTCTCGGTGGAGGTTCTGGTTATTC 410
Query 416 TGTTGGAATTACGTACGGAGATTA-TGTGAATGATGACGGCGAAGAAGATCGCGGTGGTG 474
|||||||||||||||||||||| | ||| ||||| |||||||||||||||||||
Sbjct 411 TGTTGGAATTACGTACGGAGAT-AGTGTTAATGACGACGGCGAAGAAGATCGCG------ 463
Query 475 AAGATGGTGAATACGACGATTCTTATGATCTAGACGAAGAGTTGGTTCCGCGTAGTGTGA 534
| | | | ||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 464 A-G-T----A---CGACGATTCGTATGATCTTGACGAAGAGTTGGTTCCGCGTAGCGTGA 514
Query 535 ACAAGAAGGTGGGGAGACAGAGGATGAGGAAAGTGGGGAAAAGAGCAATCGCCAAGGTCT 594
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 515 GTAAGAAGGTGGGGAGACAAAGGATGAGGAAACTGGGGAAAAGAGCAATCGCCAAGGTCT 574
Query 595 ATGCCTCGAAGAAGATGTCTCCGTTTTCGCACTTGAAACCTGGTAGCGTTCGTGGTAAGC 654
|||||||||||| || ||||||||| | ||| ||||||| ||||||||||||||
Sbjct 575 ATGCCTCGAAGAT-AT--CTCCGTTTT-----T-GAAGCCTGGTATCGTTCGTGGTAAGC 625
Query 655 ATGGTCTCGGCATGAAATTCAAGTGCTGA 683
|||||||||||||||||||||||||||||
Sbjct 626 ATGGTCTCGGCATGAAATTCAAGTGCTGA 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33054068726
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5