BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491198
Length=1268
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34588.1 | Symbols: CPuORF2 | conserved peptide upstream ope... 1799 0.0
AT4G34590.1 | Symbols: ATB2, GBF6, AtbZIP11, BZIP11 | G-box bin... 1799 0.0
AT1G75388.1 | Symbols: CPuORF5 | conserved peptide upstream ope... 67.6 3e-10
AT1G75390.1 | Symbols: AtbZIP44, bZIP44 | basic leucine-zipper ... 67.6 3e-10
> AT4G34588.1 | Symbols: CPuORF2 | conserved peptide upstream open
reading frame 2 | chr4:16521861-16523230 FORWARD LENGTH=1370
Length=1370
Score = 1799 bits (974), Expect = 0.0
Identities = 1220/1326 (92%), Gaps = 68/1326 (5%)
Strand=Plus/Plus
Query 1 GATTTTTCTTCTATAAATTCTTCCTCCTAAACCATTTCAAAGCCCCctcttctctccttc 60
||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1 GATTTTTCTTCTATAAAATCTTTCTCCTCAACCATTTCAAAGCCCCCTCTTCTCTCCTTC 60
Query 61 tct--c---tctctctctctcGAAGATATCGCCTTTAATTCCTTCCATCTTCTTCTTCTG 115
||| | ||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 61 TCTCCCTTTTCTCTCTCTCTCGAAGATATCGCCTTTAATTCC-T---TCTTCTTCTTCTG 116
Query 116 ATTTCTTCAAAGATTCATTTCTTAAAGATCTCAGCTTCTGTGAGAGTA-G-T--CTACCa 171
|||||||||||||||||||||||| |||||||||||||||| |||||| | | ||||||
Sbjct 117 ATTTCTTCAAAGATTCATTTCTTAGAGATCTCAGCTTCTGTAAGAGTAGGCTAGCTACCA 176
Query 172 aaaaaaaaaaaattagaaaaaaaCCTTGATGCTTAATCAGCAGTTCTTGGTGTTTGAGAC 231
|||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 177 AAAAAAAAGAAA-TAGAAAAAAACATTGATGCTTAATCAGCAGTTCTTGGTGTTTGAGAC 235
Query 232 ACATGTCTCCAATAATACTCAGTGAGATCTTTCTCTCTGGGTTTATGTTAAATTCCACAA 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 ACATGTCTCCAATAATACTCAGTGAGATCTTTCTCTCTGGGTTTATGTTAAATTCCACAA 295
Query 292 TCAGGCGCAGGACCCATCTTGTTCAATCTTTCTCTGTTGTCTTCCTTTACTGGCTTTACT 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TCAGGCGCAGGACCCATCTTGTTCAATCTTTCTCTGTTGTCTTCCTTTACTGGCTTTACT 355
Query 352 ATGTCTC---A----TG-A-TT-TCT---G---AATATCTATACGCATAATTAAAACAAA 395
||||||| | || | || ||| | ||||||||||||||||||| ||||||
Sbjct 356 ATGTCTCATGATCTCTGAACTTATCTCCAGTTTTATATCTATACGCATAATTACAACAAA 415
Query 396 ACCCTAGTTTCTTTTCAAATCTTTTCTTCTTCGTTTTTCGTCATCTGGGTCCTGTCCTG- 454
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 416 ACCCTAGTTTCTTTTCAAAT-TTCTCTTCTTCGTTTTTCGTCATCTGGGTCCTGTCCTGT 474
Query 455 TC--TTGT-TC-TGTTCTGTTCTG--------T----T---AACCCATTTTTAAATATTT 495
|| |||| || |||||||||||| | | |||||||||| ||||||||
Sbjct 475 TCTGTTGTGTCTTGTTCTGTTCTGTTTTTAATTCCCCTAAAAACCCATTTTAAAATATTT 534
Query 496 CATCTCTCTTCTCGTAAAGAAAAGGCTTTTCTGTTTTTGTTTGTGTGTTACTAAATGGAA 555
|||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 535 TATCTCTCTTCTCTTAAAAAAAACTCTTCCCTGTTTTTGTTTGTGTGTTACTAAATGGAA 594
Query 556 TCGTCGTCGTCGGGAACAACTTCTTCGACGATTCAAACATCGTCAGGGTCGGAGGAGAGT 615
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 595 TCGTCGTCGTCGGGAACAACTTCGTCGACGATTCAAACGTCGTCAGGATCGGAGGAGAGT 654
Query 616 CTCATGGAGCAGAGGAAACGTAAACGGATGCTCTCAAACCGTGAATCTGCAAGGAGATCG 675
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CTCATGGAGCAGAGGAAACGTAAACGGATGCTCTCAAACCGTGAATCTGCAAGGAGATCA 714
Query 676 AGGATGAAGAAACAAAAGCTCCTCGACGATCTAACGGCTCAGGTTAATCATCTGAAAAAA 735
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 715 AGAATGAAGAAACAAAAGCTCCTAGACGATCTAACGGCTCAGGTTAATCATCTGAAAAAA 774
Query 736 GAGAACACCAAGATCGTGACAAGTGTCAGCATCACAACGCAACACTACCTAACCGTTGAA 795
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GAGAACACGGAGATCGTGACAAGTGTCAGCATCACAACGCAACACTACCTAACCGTTGAA 834
Query 796 GCAGAGAACTCTGTTCTCAGAGCTCAGCTCGATGAACTTAACCACAGGCTCCAATCTCTC 855
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 835 GCAGAGAACTCTGTTCTCAGAGCTCAGCTTGATGAACTTAACCACAGGCTCCAATCTCTC 894
Query 856 AACGACATCATCGAGTTTCTCGACAGTA--A-CAACAACAACAACA------TGGGCATG 906
||||||||||||||||| |||||||||| | |||||||||||||| ||||||||
Sbjct 895 AACGACATCATCGAGTTCCTCGACAGTAGCAACAACAACAACAACAACAACATGGGCATG 954
Query 907 TGTTCGAACCCTCTGGTTGGTTTGGAGTGTGATGATTTCTTTGTGAATCAGATGAACATG 966
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 955 TGTTCGAACCCTCTGGTTGGTTTGGAGTGTGATGATTTCTTCGTGAATCAGATGAACATG 1014
Query 967 TCGTACATGATGAACCAGCCTCTCATGGCGTCTTCTGATGCTTTAATGTATTAAATGTGG 1026
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TCTTATATTATGAACCAGCCTCTCATGGCGTCTTCTGATGCTTTAATGTATTAAATGTGG 1074
Query 1027 ACCTGAAAAACCC--TCGAAATCACaaaaaaaTGGGGCCGTTTTTATTTGTCCGATTTAG 1084
|||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1075 ACCT-AAAAACCCCCTCGAAATCACAAAGAAATGGGGCCGTTTTTATTTGTCCGATTTAG 1133
Query 1085 AGACATGTCCAAAGAGAGAGATTTATATATGAAAATGGGTCTGTTGTTTGATTTGTTTCC 1144
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1134 AGACATGTCCAAAGAGAGAGATTTATATATAAAAATGGGTCTGTTGTTTGATTTGTTTCC 1193
Query 1145 ATTTCAAtttttttttttttttttGGGTCCGTTTTAGGCGTTAGGTATCTC-A-GCATCA 1202
||||||| ||||| ||| ||| ||||||||||||||||||||||||||| | ||||||
Sbjct 1194 ATTTCAAATTTTTGTTTGTTT---GGGTCCGTTTTAGGCGTTAGGTATCTCTAAGCATCA 1250
Query 1203 TCGTTATGAGTGTGTTTGTAATAAAGGCTCTGTTGCCGCATGAGTACAAAGTGTTTTCTT 1262
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 TCGTTATGAGTGTGTCTGTAATAAAGGCTCTGTTGCCGCATGAGTACAAAGTGTTTTCTT 1310
Query 1263 AATATT 1268
||||||
Sbjct 1311 AATATT 1316
> AT4G34590.1 | Symbols: ATB2, GBF6, AtbZIP11, BZIP11 | G-box binding
factor 6 | chr4:16521861-16523230 FORWARD LENGTH=1370
Length=1370
Score = 1799 bits (974), Expect = 0.0
Identities = 1220/1326 (92%), Gaps = 68/1326 (5%)
Strand=Plus/Plus
Query 1 GATTTTTCTTCTATAAATTCTTCCTCCTAAACCATTTCAAAGCCCCctcttctctccttc 60
||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1 GATTTTTCTTCTATAAAATCTTTCTCCTCAACCATTTCAAAGCCCCCTCTTCTCTCCTTC 60
Query 61 tct--c---tctctctctctcGAAGATATCGCCTTTAATTCCTTCCATCTTCTTCTTCTG 115
||| | ||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 61 TCTCCCTTTTCTCTCTCTCTCGAAGATATCGCCTTTAATTCC-T---TCTTCTTCTTCTG 116
Query 116 ATTTCTTCAAAGATTCATTTCTTAAAGATCTCAGCTTCTGTGAGAGTA-G-T--CTACCa 171
|||||||||||||||||||||||| |||||||||||||||| |||||| | | ||||||
Sbjct 117 ATTTCTTCAAAGATTCATTTCTTAGAGATCTCAGCTTCTGTAAGAGTAGGCTAGCTACCA 176
Query 172 aaaaaaaaaaaattagaaaaaaaCCTTGATGCTTAATCAGCAGTTCTTGGTGTTTGAGAC 231
|||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 177 AAAAAAAAGAAA-TAGAAAAAAACATTGATGCTTAATCAGCAGTTCTTGGTGTTTGAGAC 235
Query 232 ACATGTCTCCAATAATACTCAGTGAGATCTTTCTCTCTGGGTTTATGTTAAATTCCACAA 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 ACATGTCTCCAATAATACTCAGTGAGATCTTTCTCTCTGGGTTTATGTTAAATTCCACAA 295
Query 292 TCAGGCGCAGGACCCATCTTGTTCAATCTTTCTCTGTTGTCTTCCTTTACTGGCTTTACT 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TCAGGCGCAGGACCCATCTTGTTCAATCTTTCTCTGTTGTCTTCCTTTACTGGCTTTACT 355
Query 352 ATGTCTC---A----TG-A-TT-TCT---G---AATATCTATACGCATAATTAAAACAAA 395
||||||| | || | || ||| | ||||||||||||||||||| ||||||
Sbjct 356 ATGTCTCATGATCTCTGAACTTATCTCCAGTTTTATATCTATACGCATAATTACAACAAA 415
Query 396 ACCCTAGTTTCTTTTCAAATCTTTTCTTCTTCGTTTTTCGTCATCTGGGTCCTGTCCTG- 454
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 416 ACCCTAGTTTCTTTTCAAAT-TTCTCTTCTTCGTTTTTCGTCATCTGGGTCCTGTCCTGT 474
Query 455 TC--TTGT-TC-TGTTCTGTTCTG--------T----T---AACCCATTTTTAAATATTT 495
|| |||| || |||||||||||| | | |||||||||| ||||||||
Sbjct 475 TCTGTTGTGTCTTGTTCTGTTCTGTTTTTAATTCCCCTAAAAACCCATTTTAAAATATTT 534
Query 496 CATCTCTCTTCTCGTAAAGAAAAGGCTTTTCTGTTTTTGTTTGTGTGTTACTAAATGGAA 555
|||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 535 TATCTCTCTTCTCTTAAAAAAAACTCTTCCCTGTTTTTGTTTGTGTGTTACTAAATGGAA 594
Query 556 TCGTCGTCGTCGGGAACAACTTCTTCGACGATTCAAACATCGTCAGGGTCGGAGGAGAGT 615
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 595 TCGTCGTCGTCGGGAACAACTTCGTCGACGATTCAAACGTCGTCAGGATCGGAGGAGAGT 654
Query 616 CTCATGGAGCAGAGGAAACGTAAACGGATGCTCTCAAACCGTGAATCTGCAAGGAGATCG 675
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CTCATGGAGCAGAGGAAACGTAAACGGATGCTCTCAAACCGTGAATCTGCAAGGAGATCA 714
Query 676 AGGATGAAGAAACAAAAGCTCCTCGACGATCTAACGGCTCAGGTTAATCATCTGAAAAAA 735
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 715 AGAATGAAGAAACAAAAGCTCCTAGACGATCTAACGGCTCAGGTTAATCATCTGAAAAAA 774
Query 736 GAGAACACCAAGATCGTGACAAGTGTCAGCATCACAACGCAACACTACCTAACCGTTGAA 795
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GAGAACACGGAGATCGTGACAAGTGTCAGCATCACAACGCAACACTACCTAACCGTTGAA 834
Query 796 GCAGAGAACTCTGTTCTCAGAGCTCAGCTCGATGAACTTAACCACAGGCTCCAATCTCTC 855
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 835 GCAGAGAACTCTGTTCTCAGAGCTCAGCTTGATGAACTTAACCACAGGCTCCAATCTCTC 894
Query 856 AACGACATCATCGAGTTTCTCGACAGTA--A-CAACAACAACAACA------TGGGCATG 906
||||||||||||||||| |||||||||| | |||||||||||||| ||||||||
Sbjct 895 AACGACATCATCGAGTTCCTCGACAGTAGCAACAACAACAACAACAACAACATGGGCATG 954
Query 907 TGTTCGAACCCTCTGGTTGGTTTGGAGTGTGATGATTTCTTTGTGAATCAGATGAACATG 966
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 955 TGTTCGAACCCTCTGGTTGGTTTGGAGTGTGATGATTTCTTCGTGAATCAGATGAACATG 1014
Query 967 TCGTACATGATGAACCAGCCTCTCATGGCGTCTTCTGATGCTTTAATGTATTAAATGTGG 1026
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TCTTATATTATGAACCAGCCTCTCATGGCGTCTTCTGATGCTTTAATGTATTAAATGTGG 1074
Query 1027 ACCTGAAAAACCC--TCGAAATCACaaaaaaaTGGGGCCGTTTTTATTTGTCCGATTTAG 1084
|||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1075 ACCT-AAAAACCCCCTCGAAATCACAAAGAAATGGGGCCGTTTTTATTTGTCCGATTTAG 1133
Query 1085 AGACATGTCCAAAGAGAGAGATTTATATATGAAAATGGGTCTGTTGTTTGATTTGTTTCC 1144
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1134 AGACATGTCCAAAGAGAGAGATTTATATATAAAAATGGGTCTGTTGTTTGATTTGTTTCC 1193
Query 1145 ATTTCAAtttttttttttttttttGGGTCCGTTTTAGGCGTTAGGTATCTC-A-GCATCA 1202
||||||| ||||| ||| ||| ||||||||||||||||||||||||||| | ||||||
Sbjct 1194 ATTTCAAATTTTTGTTTGTTT---GGGTCCGTTTTAGGCGTTAGGTATCTCTAAGCATCA 1250
Query 1203 TCGTTATGAGTGTGTTTGTAATAAAGGCTCTGTTGCCGCATGAGTACAAAGTGTTTTCTT 1262
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 TCGTTATGAGTGTGTCTGTAATAAAGGCTCTGTTGCCGCATGAGTACAAAGTGTTTTCTT 1310
Query 1263 AATATT 1268
||||||
Sbjct 1311 AATATT 1316
> AT1G75388.1 | Symbols: CPuORF5 | conserved peptide upstream open
reading frame 5 | chr1:28291698-28293008 FORWARD LENGTH=1311
Length=1311
Score = 67.6 bits (36), Expect = 3e-10
Identities = 52/59 (88%), Gaps = 3/59 (5%)
Strand=Plus/Plus
Query 297 CGCAGGACCCATCTTGTTCAATCTTTCTCTGTTGTCTTCCTTTACTGGCTTTACTATGT 355
||||||||||||||||||||||||||||| || ||||| || |||||| || ||||||
Sbjct 318 CGCAGGACCCATCTTGTTCAATCTTTCTCCGTCGTCTTTCTCTACTGG-TT--CTATGT 373
> AT1G75390.1 | Symbols: AtbZIP44, bZIP44 | basic leucine-zipper
44 | chr1:28291698-28293008 FORWARD LENGTH=1311
Length=1311
Score = 67.6 bits (36), Expect = 3e-10
Identities = 52/59 (88%), Gaps = 3/59 (5%)
Strand=Plus/Plus
Query 297 CGCAGGACCCATCTTGTTCAATCTTTCTCTGTTGTCTTCCTTTACTGGCTTTACTATGT 355
||||||||||||||||||||||||||||| || ||||| || |||||| || ||||||
Sbjct 318 CGCAGGACCCATCTTGTTCAATCTTTCTCCGTCGTCTTTCTCTACTGG-TT--CTATGT 373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62349076890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5