BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491201
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34560.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1315 0.0
> AT4G34560.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G66440.1);
Has 67 Blast hits to 66 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:16507635-16508754
FORWARD LENGTH=1120
Length=1120
Score = 1315 bits (712), Expect = 0.0
Identities = 906/996 (91%), Gaps = 28/996 (3%)
Strand=Plus/Plus
Query 1 ACAAACTGGTCCATGTTCACCATGACTATTGTTCTTCTTCCTCTGTTTAATCTCTTTATG 60
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 93 ACAAACTGGTCCTTGTTCACCATGACTATTGTTCTTCTTCCTTTGTTTAATCTCCTGATG 152
Query 61 GCAAAACTCTCTGCTTCTTCTCACTTCGTTTCCCTAAATATCACTTCTTTCGAGTGACCT 120
|||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||
Sbjct 153 ACAAAACTCTCTG---CTACTCACTTTGTTTCCGTAAATATCACTTCTTTCGAGTGACCT 209
Query 121 AAATCACTCCCACGATCCCTT---TAAG-TCCTTTTTCTTG-TTTTGTCCTGTGtttttt 175
|||||||| |||||||| ||| ||| ||| |||||||| |||| | ||||| |||
Sbjct 210 AAATCACTTCCACGATCTCTTAAAAAAGCTCC-TTTTCTTGCTTTT-TTCTGTG---TTT 264
Query 176 ttctttttGCAAGAAATCATCTTGATGGATCCAATTAAGTTCCAACACTTAAAGATGGAG 235
||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 265 TTCTTTTTGCAAGAATTCATCTTGATGGATCCAATTAAGTTTCAACACTTGAAGATGGAG 324
Query 236 AAATCCAGAGGAATCTTGAATTTCCAAGTAATAAGATCGTTCACGAGCTTGTTCAGACTG 295
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 325 AAATCCAGAGGAATCTTGAATTTCCAAGCAATAAGATCGTTCACGAGCTTGTTCAGACTG 384
Query 296 ATCGAGCTGCTTTTTCTTCTAATCTTGATTTCCAAACTCTCTTTCCCCTCTGTGAAACTC 355
||||||| ||| ||||| |||||||||| ||||||||||||||||| ||||| ||| ||
Sbjct 385 TTCGAGCTTCTTCTTCTTGTAATCTTGATCTCCAAACTCTCTTTCCCTTCTGTAAAAATC 444
Query 356 TCCGGGGACATTTTCAGGGAAGCAGCAGTGTTTCTCGTTAGCCCGAGATTCGTTTTCTTC 415
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TCTGGGGACATTTTCAAGGAAGCAGCAGTGTTTCTCGTTAGCCCGAGATTCGTTTTCTTC 504
Query 416 GTCGGAAACGCAATTGTAATTACTCTTTTTGCGAAATCCGGACGATACAGCTCGAGTCAG 475
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 505 ATCGGAAACGCAATTGTAATTACTCTTCTTGCGAAATCCGGACGATACAGCTCGAGTCAC 564
Query 476 GAGCCTTTAAAGACAACAACAGAAGCTGAAAGTAACGATCTTTACCAAGATTTTCTTCAT 535
||||||| ||||||| |||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 565 GAGCCTTCAAAGACAGCAACAGAAGCTGCAAGCAACGATCTTTACCAAGAATTTCTTCAC 624
Query 536 AAGAGTGAGAAGAAAAAATCTGTAGTTTACGAGACGAAAACAGAACAACTGAAGAAGCCG 595
|||||||||||||| ||| | |||||||||| ||||||||||||||||| |||||||||
Sbjct 625 AAGAGTGAGAAGAAGAAACCCGTAGTTTACGCTACGAAAACAGAACAACTAAAGAAGCCG 684
Query 596 AGTGGAGTGATCAAGAGGGTTAGTTTCGGGAGAAGCCAATCGCAGAAAGCGCTTGAGGCG 655
||||||| || | |||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 685 AGTGGAGGGA--A-GAGGGTTAGTTTCGGGAGAAGCCAATCGCACAAAGCGTTTGAGGCG 741
Query 656 GTTCAGCCGCTAGAGAGTACCAATGGTGAGAAAACCATAAAGAGGTATGTGTCGGAGAAG 715
||| ||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 742 GTTAAGCCGCTGGAGAGTACCAATGGTGAGAAAAACATGAAGAGGTATGTGTCGGAGAAG 801
Query 716 CATATGAGGATTTGTGACTCCGACAAGAAAGTAGTGGTGAGGGTTAAGAAACCAGAAGAT 775
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 802 CATATGAGGGTTTGTGACTCCGACAAGAAAGTAGTGGTGAGAGTTAAGAAACCAGAAGAT 861
Query 776 GGAATGAGTAACGAGCAATTTAGGACAAAGATTGAAGCTTTCATTGCGAGACAAAAGAGG 835
|||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 862 GGAATGAGCAACGAGCAATTTAGGACAAAGATTGAAGCTTTCATCGCTAGACAAAAGAGA 921
Query 836 ATTCAAAAGAATGAAGAACATTTAATAATCTAG--A--TCCTCTTTGCTAGTGAATGTTT 891
||||||||| |||||||||| || ||||||||| | ||||||||||||||||||||||
Sbjct 922 ATTCAAAAGGATGAAGAACACTTGATAATCTAGCTAGATCCTCTTTGCTAGTGAATGTTT 981
Query 892 GTTTCTGTTTCttttttttttcctttttGTTATTATAAACTTGAATCCTCTGTTTCATAA 951
||| | ||| ||||||||| |||| | ||||| | || ||||||||||||||| | |||
Sbjct 982 -TTT-T-TTT-TTTTTTTTT-CCTTCTGGTTAT-A-AA-CTTGAATCCTCTGTTACGTAA 1033
Query 952 TCTTGTAACTTTGCCTTAGAAAATCTCTTTATCTTT 987
|||||||||||||||||||||| |||||||||||||
Sbjct 1034 TCTTGTAACTTTGCCTTAGAAATTCTCTTTATCTTT 1069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5