BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491205
Length=1213
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34530.1 | Symbols: CIB1 | cryptochrome-interacting basic-he... 1616 0.0
AT4G34540.1 | Symbols: | NmrA-like negative transcriptional re... 1616 0.0
AT3G23690.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 161 1e-38
> AT4G34530.1 | Symbols: CIB1 | cryptochrome-interacting basic-helix-loop-helix
1 | chr4:16498391-16500174 FORWARD LENGTH=1311
Length=1311
Score = 1616 bits (875), Expect = 0.0
Identities = 1127/1242 (91%), Gaps = 44/1242 (4%)
Strand=Plus/Plus
Query 1 AAGAAGAAGATAACGATGAATGGAGCTATAGGAGGTGACCTTTTACTCAA-TTGCACGGA 59
||||||| |||||||||||||||||||||||||||||||||||| ||||| || | | ||
Sbjct 61 AAGAAGACGATAACGATGAATGGAGCTATAGGAGGTGACCTTTTGCTCAATTTTC-CTGA 119
Query 60 CATGTCGGTCCTAGAGCGCCAAAGGGCTCACCTTAAGTATCTCAATCCCAGCTTTGATTC 119
||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||
Sbjct 120 CATGTCGGTCCTAGAGCGCCAAAGGGCTCACCTCAAGTACCTCAATCCCACCTTTGATTC 179
Query 120 TCCTCTCGCCGGCTTCTTTGCCGATTCATCAATGATTAACGGCGGCGAGATGGACGGCTT 179
||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||
Sbjct 180 TCCTCTCGCCGGCTTCTTTGCCGATTCTTCAATGATTACCGGCGGCGAGATGGACAGCTA 239
Query 180 TCTTGCGACTGCCGGTTTGAATCTTCCGATGATTTACGG-GCAGACGACGGTGGAAGGTG 238
|||| |||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 240 TCTTTCGACTGCCGGTTTGAATCTTCCGATGATGTACGGTG-AGACGACGGTGGAAGGTG 298
Query 239 ATCCAAGAATGTCAATTTCCCCGGAAACTACGCTTGGGACTGGAAATTTCAAGAAAAGGA 298
|| ||||| | |||||||| |||||||| ||||||||||||||||||||||||||| |||
Sbjct 299 ATTCAAGACTCTCAATTTCGCCGGAAACGACGCTTGGGACTGGAAATTTCAAGAAACGGA 358
Query 299 AGTTTGATACAGAGACTAAGGATTGTAAT--G-agaagaagaaga--a-gatgaacagag 352
||||||||||||||||||||||||||||| | |||||||||||| | |||||||||||
Sbjct 359 AGTTTGATACAGAGACTAAGGATTGTAATGAGAAGAAGAAGAAGATGACGATGAACAGAG 418
Query 353 aaga---agta-acagaagaagaagaagaaaagtcgaaaataacagaacTAAACAATGGG 408
| || |||| | ||||| ||||||||| ||||||||||||||||| | ||||||||||
Sbjct 419 ATGACCTAGTAGA-AGAAGGAGAAGAAGAGAAGTCGAAAATAACAGAGCAAAACAATGGG 477
Query 409 AGCCCAATAAGCATCAAGAAGATGAAAAACAAAGCCAAGAAAGAAGAGAAAAATTGCTCT 468
||| ||| ||||||||||||||||||| |||||||||||||||||||||| |||| ||||
Sbjct 478 AGCACAAAAAGCATCAAGAAGATGAAACACAAAGCCAAGAAAGAAGAGAACAATTTCTCT 537
Query 469 AACGATTCATCTAAAGTGACGAAGGAACTGGAGAAAACGGATTATATTCATGTTCGTGCA 528
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 538 AATGATTCATCTAAAGTGACGAAGGAATTGGAGAAAACGGATTATATTCATGTTCGTGCA 597
Query 529 CGTCGAGGCCAAGCCACTGATAGTCACAGCATAGCAGAGCGGGTTAGAAGAGAAAAGATT 588
|| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 598 CGACGAGGCCAAGCCACTGATAGTCACAGCATAGCAGAACGAGTTAGAAGAGAAAAGATC 657
Query 589 AGTGAGAGAATGAAGTTTCTACAAGATTTGGTTCCTGGATGCGACAAGATCACAGGCAAA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGTGAGAGAATGAAGTTTCTACAAGATTTGGTTCCTGGATGCGACAAGATCACAGGCAAA 717
Query 649 GCAGGGATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAGAGACAAATTGAGTTC 708
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 718 GCAGGGATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAGAGACAAATCGAGTTC 777
Query 709 TTATCGATGAAGCTAGCAGTTGTGAATCCAAGGCCGGATTTTGATATGGATGACATTTTT 768
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATGGATGACATTTTT 837
Query 769 GCCAAAGAGGTAATTGTCTCAACTCCAATGACTGTGGTGCCATCTCCTGAAATGGTTCAC 828
||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GCCAAAGAGGT--T-GCCTCAACTCCAATGACTGTGGTGCCATCTCCTGAAATGGTTCTT 894
Query 829 TCCGGTTATTCTCATGAGATGGTTAATTCCGGCTATTCCAATGAGATGGTTAATTCCGGT 888
|||||||||||||||||||||||| | || || ||||| | |||||||||||| ||||||
Sbjct 895 TCCGGTTATTCTCATGAGATGGTTCACTCTGGTTATTCTAGTGAGATGGTTAACTCCGGT 954
Query 889 TATCATCATGTCAATCCAATGCAGCAAGCGGAA-ACCAGTTCTGATCCACTGTCATGCTT 947
|| | ||||||||||||||||||||||| | || ||||||||||||||| ||||||||||
Sbjct 955 TACCTTCATGTCAATCCAATGCAGCAAGTG-AATACCAGTTCTGATCCATTGTCATGCTT 1013
Query 948 CAACAATGGCCAAGCTCCTTCAATGTGGGACTCTTATGTGCAGAATCTTTATGGGAGTTT 1007
|||||||||| |||||||||| |||||||||||| ||||||||||||| ||||| | |||
Sbjct 1014 CAACAATGGCGAAGCTCCTTCGATGTGGGACTCTCATGTGCAGAATCTCTATGGCAATTT 1073
Query 1008 AGGAGTTTGATTAAGAACAACGATTCACAACTTAACAATGTTCCCTAATTCAAATTATTC 1067
||||||||||||||||| | | || |||||| ||||||||||||||||||||||||||||
Sbjct 1074 AGGAGTTTGATTAAGAA-ACCAATCCACAACATAACAATGTTCCCTAATTCAAATTATTC 1132
Query 1068 ATCGGAAGAGAAGAGAGAGCAAACTTA-TAGCTGTTATTTACTAATTTCC-CTAGATTAT 1125
||||||||||| ||| ||||| | ||||||||||||||||||| || |||||||||
Sbjct 1133 ATCGGAAGAGA-GAG----CAAACC-AGTAGCTGTTATTTACTAATT-CCACTAGATTAT 1185
Query 1126 TGACTTGAGATTTCCCGCCCATTATTTTATGTATCAAA---T-TA-A-AG-A--GTGTAT 1176
||||||||||| ||||||||||| || |||||||||| | || | | | ||||||
Sbjct 1186 TGACTTGAGATCCCCCGCCCATTAGTTGATGTATCAAAGAGTGTAGACATTATTGTGTAT 1245
Query 1177 AAATTGCAAACCAGT----TA-TATATTTCTTACCAGTGGAC 1213
|| |||||||||||| || ||||||||||| | ||||||
Sbjct 1246 AATTTGCAAACCAGTCCAGTAATATATTTCTTATCGGTGGAC 1287
> AT4G34540.1 | Symbols: | NmrA-like negative transcriptional
regulator family protein | chr4:16498391-16502174 FORWARD LENGTH=2805
Length=2805
Score = 1616 bits (875), Expect = 0.0
Identities = 1127/1242 (91%), Gaps = 44/1242 (4%)
Strand=Plus/Plus
Query 1 AAGAAGAAGATAACGATGAATGGAGCTATAGGAGGTGACCTTTTACTCAA-TTGCACGGA 59
||||||| |||||||||||||||||||||||||||||||||||| ||||| || | | ||
Sbjct 61 AAGAAGACGATAACGATGAATGGAGCTATAGGAGGTGACCTTTTGCTCAATTTTC-CTGA 119
Query 60 CATGTCGGTCCTAGAGCGCCAAAGGGCTCACCTTAAGTATCTCAATCCCAGCTTTGATTC 119
||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||
Sbjct 120 CATGTCGGTCCTAGAGCGCCAAAGGGCTCACCTCAAGTACCTCAATCCCACCTTTGATTC 179
Query 120 TCCTCTCGCCGGCTTCTTTGCCGATTCATCAATGATTAACGGCGGCGAGATGGACGGCTT 179
||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||
Sbjct 180 TCCTCTCGCCGGCTTCTTTGCCGATTCTTCAATGATTACCGGCGGCGAGATGGACAGCTA 239
Query 180 TCTTGCGACTGCCGGTTTGAATCTTCCGATGATTTACGG-GCAGACGACGGTGGAAGGTG 238
|||| |||||||||||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 240 TCTTTCGACTGCCGGTTTGAATCTTCCGATGATGTACGGTG-AGACGACGGTGGAAGGTG 298
Query 239 ATCCAAGAATGTCAATTTCCCCGGAAACTACGCTTGGGACTGGAAATTTCAAGAAAAGGA 298
|| ||||| | |||||||| |||||||| ||||||||||||||||||||||||||| |||
Sbjct 299 ATTCAAGACTCTCAATTTCGCCGGAAACGACGCTTGGGACTGGAAATTTCAAGAAACGGA 358
Query 299 AGTTTGATACAGAGACTAAGGATTGTAAT--G-agaagaagaaga--a-gatgaacagag 352
||||||||||||||||||||||||||||| | |||||||||||| | |||||||||||
Sbjct 359 AGTTTGATACAGAGACTAAGGATTGTAATGAGAAGAAGAAGAAGATGACGATGAACAGAG 418
Query 353 aaga---agta-acagaagaagaagaagaaaagtcgaaaataacagaacTAAACAATGGG 408
| || |||| | ||||| ||||||||| ||||||||||||||||| | ||||||||||
Sbjct 419 ATGACCTAGTAGA-AGAAGGAGAAGAAGAGAAGTCGAAAATAACAGAGCAAAACAATGGG 477
Query 409 AGCCCAATAAGCATCAAGAAGATGAAAAACAAAGCCAAGAAAGAAGAGAAAAATTGCTCT 468
||| ||| ||||||||||||||||||| |||||||||||||||||||||| |||| ||||
Sbjct 478 AGCACAAAAAGCATCAAGAAGATGAAACACAAAGCCAAGAAAGAAGAGAACAATTTCTCT 537
Query 469 AACGATTCATCTAAAGTGACGAAGGAACTGGAGAAAACGGATTATATTCATGTTCGTGCA 528
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 538 AATGATTCATCTAAAGTGACGAAGGAATTGGAGAAAACGGATTATATTCATGTTCGTGCA 597
Query 529 CGTCGAGGCCAAGCCACTGATAGTCACAGCATAGCAGAGCGGGTTAGAAGAGAAAAGATT 588
|| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 598 CGACGAGGCCAAGCCACTGATAGTCACAGCATAGCAGAACGAGTTAGAAGAGAAAAGATC 657
Query 589 AGTGAGAGAATGAAGTTTCTACAAGATTTGGTTCCTGGATGCGACAAGATCACAGGCAAA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGTGAGAGAATGAAGTTTCTACAAGATTTGGTTCCTGGATGCGACAAGATCACAGGCAAA 717
Query 649 GCAGGGATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAGAGACAAATTGAGTTC 708
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 718 GCAGGGATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAGAGACAAATCGAGTTC 777
Query 709 TTATCGATGAAGCTAGCAGTTGTGAATCCAAGGCCGGATTTTGATATGGATGACATTTTT 768
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATGGATGACATTTTT 837
Query 769 GCCAAAGAGGTAATTGTCTCAACTCCAATGACTGTGGTGCCATCTCCTGAAATGGTTCAC 828
||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GCCAAAGAGGT--T-GCCTCAACTCCAATGACTGTGGTGCCATCTCCTGAAATGGTTCTT 894
Query 829 TCCGGTTATTCTCATGAGATGGTTAATTCCGGCTATTCCAATGAGATGGTTAATTCCGGT 888
|||||||||||||||||||||||| | || || ||||| | |||||||||||| ||||||
Sbjct 895 TCCGGTTATTCTCATGAGATGGTTCACTCTGGTTATTCTAGTGAGATGGTTAACTCCGGT 954
Query 889 TATCATCATGTCAATCCAATGCAGCAAGCGGAA-ACCAGTTCTGATCCACTGTCATGCTT 947
|| | ||||||||||||||||||||||| | || ||||||||||||||| ||||||||||
Sbjct 955 TACCTTCATGTCAATCCAATGCAGCAAGTG-AATACCAGTTCTGATCCATTGTCATGCTT 1013
Query 948 CAACAATGGCCAAGCTCCTTCAATGTGGGACTCTTATGTGCAGAATCTTTATGGGAGTTT 1007
|||||||||| |||||||||| |||||||||||| ||||||||||||| ||||| | |||
Sbjct 1014 CAACAATGGCGAAGCTCCTTCGATGTGGGACTCTCATGTGCAGAATCTCTATGGCAATTT 1073
Query 1008 AGGAGTTTGATTAAGAACAACGATTCACAACTTAACAATGTTCCCTAATTCAAATTATTC 1067
||||||||||||||||| | | || |||||| ||||||||||||||||||||||||||||
Sbjct 1074 AGGAGTTTGATTAAGAA-ACCAATCCACAACATAACAATGTTCCCTAATTCAAATTATTC 1132
Query 1068 ATCGGAAGAGAAGAGAGAGCAAACTTA-TAGCTGTTATTTACTAATTTCC-CTAGATTAT 1125
||||||||||| ||| ||||| | ||||||||||||||||||| || |||||||||
Sbjct 1133 ATCGGAAGAGA-GAG----CAAACC-AGTAGCTGTTATTTACTAATT-CCACTAGATTAT 1185
Query 1126 TGACTTGAGATTTCCCGCCCATTATTTTATGTATCAAA---T-TA-A-AG-A--GTGTAT 1176
||||||||||| ||||||||||| || |||||||||| | || | | | ||||||
Sbjct 1186 TGACTTGAGATCCCCCGCCCATTAGTTGATGTATCAAAGAGTGTAGACATTATTGTGTAT 1245
Query 1177 AAATTGCAAACCAGT----TA-TATATTTCTTACCAGTGGAC 1213
|| |||||||||||| || ||||||||||| | ||||||
Sbjct 1246 AATTTGCAAACCAGTCCAGTAATATATTTCTTATCGGTGGAC 1287
> AT3G23690.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:8528632-8531012 REVERSE LENGTH=1774
Length=1774
Score = 161 bits (87), Expect = 1e-38
Identities = 190/239 (79%), Gaps = 10/239 (4%)
Strand=Plus/Plus
Query 508 GATTATATTCATGTTC-GTGC-ACGTCGAGGCCAAGCCACTGATAGTCACAG-CATAGCA 564
||||||||||||| || | || | | | || ||||| |||||||| || || | | ||
Sbjct 916 GATTATATTCATG-TCAGAGCTA-GAAGGGGTCAAGCAACTGATAGCCATAGTC-TTGCT 972
Query 565 GAGCGGGTTAGAAGAGAAAAGATTAGTGAGAGAATGAAGTTTCTACAAGATTTGGTTCCT 624
|| | | |||||||||||||||||||||||||||| ||| || || ||| ||||||||
Sbjct 973 GAAAGAGCAAGAAGAGAAAAGATTAGTGAGAGAATGACGTTGCTTCAGGATCTGGTTCCT 1032
Query 625 GGATGCGACAAGATCACAGGCAAAGCAGGGATGCTTGATGAAATCATTAACTATGTTCAG 684
|| ||| || ||| ||||| ||||||| |||||||||||||| || || ||||| |||
Sbjct 1033 GGTTGCAACCGGATTACAGGGAAAGCAGTCATGCTTGATGAAATTATAAATTATGTGCAG 1092
Query 685 TCTCTT-CAGAGACAAATTGAGTTCTTATCGATGAAGCTAGC-AGTTGTGAATCCAAGG 741
|| ||| ||||||||| |||||||||| || |||||||| || | || |||||||||
Sbjct 1093 TC-CTTGCAGAGACAAGTTGAGTTCTTGTCCATGAAGCTGGCTACC-GTAAATCCAAGG 1149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59588046915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5