BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491208
Length=1633
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34500.1 | Symbols: | Protein kinase superfamily protein | ... 2442 0.0
> AT4G34500.1 | Symbols: | Protein kinase superfamily protein
| chr4:16487754-16490954 REVERSE LENGTH=1727
Length=1727
Score = 2442 bits (1322), Expect = 0.0
Identities = 1504/1588 (95%), Gaps = 28/1588 (2%)
Strand=Plus/Plus
Query 61 TTTCTCTACT-CGTGTCA-CGCGATGTCGGACTCTGGTGGGGGTGGTTCTCACAAGTCCT 118
|||||||||| |||| | ||||||||||||||||||| |||||||||||||||||||
Sbjct 142 TTTCTCTACTCCGTG--ATCGCGATGTCGGACTCTGGT---GGTGGTTCTCACAAGTCCT 196
Query 119 CCACAACAAAATCTTCCATTTTCGGACTAAACCTCTACTTAGTCATCGCGATTTGTTCTG 178
||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 197 CCACAACAAAACCTTCCGTTTTCGGACTAAACCTTTACTTAGTCATCGCGATTTGTTCTG 256
Query 179 TTTTCATACTCTTGATCTCACTCTTGATCTTCCTCTTCGTCTGCTTGAATCGCGTCTCAC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 TTTTCATACTCTTGATCTCACTCTTGATCTTCCTCTTCGTCTGCTTGAATCGCGTCTCAC 316
Query 239 GCGCTCGTAAAATGCGCGTGAAACACAGCTCCGGCTCGATCCCTCTCGTCTCTAAAGAAA 298
||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 317 GCGCTCGTAGAATGCGCGTTAAACACAGCTCCGGCTCGATCCCGCTCGTCTCTAAAGAAA 376
Query 299 TCTCGGAGATCAAGACTGTCGGAAAATTTATTAACTCCGATGATTCCAAGGGTAAAATGG 358
|||||||||||||||| ||||| ||||| || |||||||| ||||||||||||||||| |
Sbjct 377 TCTCGGAGATCAAGACGGTCGGCAAATTCATAAACTCCGACGATTCCAAGGGTAAAATCG 436
Query 359 GAAACGAAGTTGTTGTTGTTGTCTCCGCCTCAAGCAAAGAAGCGACGAGTGGGTTTGATA 418
||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||
Sbjct 437 GAAACGAAGTTGTTGTTGTTGTCTCCGCCACAAGCAAAGAAGCGACAAGTGGTTTTGATA 496
Query 419 CTTTGTCGGTGGCTTCAAGCGGTGACGTTGG--C-TCTGAGGTAATGGGATGGGGAAGAT 475
|||||||||||||||| |||||||||||||| | ||||||| |||||||||||||| ||
Sbjct 497 CTTTGTCGGTGGCTTCGAGCGGTGACGTTGGTACTTCTGAGGCAATGGGATGGGGAAAAT 556
Query 476 GGTACAGCTTAAAAGATCTGGAGATTGCGACACGTGGCTTCTCCGATGAAAACATGATCG 535
|||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 557 GGTACAGCTTGAAAGATCTGGAGATTGCGACACGTGGCTTCTCTGATGATAACATGATCG 616
Query 536 GTGAAGGAGGCTACGGTGTTGTTTATAGAGCTGATTTCTCCGACGGTTCTGTCGCCGCCG 595
|||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 617 GTGAAGGAGGGTACGGTGTCGTTTACAGAGCTGATTTCTCTGACGGTTCTGTCGCCGCCG 676
Query 596 TCAAGAATCTCCTTAACAACAAGGGTCAGGCCGAGAAAGAGTTCAAAGTTGAAGTAGAAG 655
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 677 TCAAGAATCTCCTTAACAACAAGGGTCAGGCGGAGAAGGAGTTCAAAGTTGAAGTAGAAG 736
Query 656 CAATTGGGAAAGTAAGACATAAGAACTTGGTTGGTCTGATGGGATATTGTGCTGACAGTG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 CAATTGGGAAAGTAAGACATAAGAACTTGGTTGGTCTGATGGGATATTGTGCTGACAGTG 796
Query 716 --C----TCAAAGGATGCTTGTGTATGAATATATTGATAATGGAAACTTGGAGCAGTGGT 769
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 CTCAAAGTCAAAGGATGCTTGTGTATGAATATATTGATAATGGAAACTTGGAGCAGTGGT 856
Query 770 TACACGGTGATGTAGGTCCGGTGAGTCCTCTTACGTGGGATATCCGCATGAAGATTGCCA 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 857 TACACGGTGATGTAGGTCCGGTGAGTCCTCTTACGTGGGATATCCGCATGAAGATAGCCA 916
Query 830 TTGGAACAGCAAAAGGATTAGCCTATTTACACGAAGGGCTTGAACCTAAGGTTGTGCACC 889
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 917 TTGGAACAGCAAAAGGATTAGCCTATTTACATGAAGGGCTTGAACCTAAGGTTGTGCACC 976
Query 890 GTGATGT-AAAGTCTAGTAACATCTTGCTCGATAAGAAATGGAACGCGAAAGTGTCGGAT 948
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 977 GTGATGTGAAA-TCTAGTAACATCTTGCTCGATAAGAAATGGAACGCGAAAGTGTCTGAT 1035
Query 949 TTCGGTTTGGCCAAGTTATTAGGATCTGAGACAAGCTATGTGACAACTCGTGTGATGGGA 1008
|| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1036 TTTGGTTTGGCCAAGTTATTAGGATCTGAAACAAGCTACGTGACAACTCGTGTGATGGGA 1095
Query 1009 ACTTTTGGATATGTTTCACCGGAATATGCAAGTACGGGTATGCTCAATGAGTGTAGTGAT 1068
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1096 ACTTTTGGATATGTTTCACCGGAATATGCAAGTACTGGTATGCTCAATGAGTGTAGTGAT 1155
Query 1069 GTCTACAGTTTCGGTGTTCTGCTCATGGAGATCATTACAGGAAGGAGCCCTGTCGATTAT 1128
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1156 GTCTACAGTTTCGGTGTTCTGCTCATGGAGATCATTACAGGAAGGAGCCCAGTTGATTAT 1215
Query 1129 TCAAGACCGCCTGGCGAGATGAACTTAGTGGATTGGTTCAAAGGAATGGTTGCAAGTAGA 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 TCAAGACCGCCTGGCGAGATGAACTTAGTGGATTGGTTCAAAGGAATGGTTGCAAGTAGA 1275
Query 1189 CGTGGAGAAGAAGTTATAGACCCTAAAATAAAGATGTCACCTCCTCCAAGAGCTTTGAAA 1248
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1276 CGTGGAGAAGAAGTTATAGACCCTAAAATCAAGACATCACCTCCTCCAAGAGCTTTGAAA 1335
Query 1249 AGAGCTTTGCTTGTTTGTTTGCGTTGCATAGACCTTGACGCTAGTAAACGACCAAAGATG 1308
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1336 AGAGCTTTGCTTGTTTGTTTGCGTTGCATAGACCTTGACTCTAGTAAACGACCAAAGATG 1395
Query 1309 GGACAAATCATTCACATGCTTGAGGCTGAAGATTTTCCATTCCGTCCTGAACACAGATCA 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 GGACAAATCATTCACATGCTTGAGGCTGAAGATTTTCCATTCCGTCCTGAACACAGATCA 1455
Query 1369 AACCAGGAAAGATTGAAGTGAGAAAGCTTCTAAGGCAAACAATAATGTCTTGGGGAAGAC 1428
||||||||||||| ||||| |||||| || | |||||||||||||||||||||||||||
Sbjct 1456 AACCAGGAAAGATCGAAGTAAGAAAGATTATTGGGCAAACAATAATGTCTTGGGGAAGAC 1515
Query 1429 CACACTTGAGAGTTGATGCTATTCGTTACACAGCCATATATTGATAGATGTTGTTTTTCA 1488
|||||||||| ||||||||||||| ||||||||||||||||||||||||||| | ||
Sbjct 1516 CACACTTGAGCGTTGATGCTATTCATTACACAGCCATATATTGATAGATGTT-TC---CA 1571
Query 1489 TGTTTGTTCTTATATTGAG-GAATTG-TGATGCAAAAGATAAAATTGGAAAAGTGAGATT 1546
||||||||||||||||||| | |||| | |||||||||| |||||||||||||||| |||
Sbjct 1572 TGTTTGTTCTTATATTGAGAGGATTGAT-ATGCAAAAGAGAAAATTGGAAAAGTGAAATT 1630
Query 1547 AGATATTATGAGGATGGAATTCAGATTTAAGGCTTGTAATTTGTAAATATCAT-ATATAT 1605
|||||| ||||||||| |||||||||||| ||||||||||||||||||| || ||||||
Sbjct 1631 AGATAT-ATGAGGATGAAATTCAGATTTATCGCTTGTAATTTGTAAATAT-ATCATATAT 1688
Query 1606 TGTATAATAAAACAGTGAACTCAAAGAA 1633
|||||||||||||||||||||| |||||
Sbjct 1689 TGTATAATAAAACAGTGAACTCTAAGAA 1716
Score = 100 bits (54), Expect = 4e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1 TTTTGTTTGTTTGCTCCTAACGTTTCTCTTTCTTCGAACAATCTCCAGAAAACCAAACTA 60
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 56 TTTTGTTTGTTTGCTCCTAACGTTTCTCTTTCTTGGAACAATCTCCAGCAAACCAAACTA 115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80672275815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5