BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491210
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34480.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 1759 0.0
AT5G42720.1 | Symbols: | Glycosyl hydrolase family 17 protein ... 206 5e-52
> AT4G34480.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr4:16480934-16483995 REVERSE LENGTH=1735
Length=1735
Score = 1759 bits (952), Expect = 0.0
Identities = 1029/1067 (96%), Gaps = 2/1067 (0%)
Strand=Plus/Plus
Query 1 ACCATCAATGGctctctccatctccatctctctcctcctcatcttcctctctcacttccc 60
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1 ACCATCAATGGCTCTCTCCATCTCCATCTATTTCCTCCTCATCTTCCTCTCTCACTTCCC 60
Query 61 ctcctcACATGCAGAGCCTTTCATCGGAGTTAACTACGGCCAAGTCGCCGACAATCTCCC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCCTCACATGCAGAGCCTTTCATCGGAGTTAACTACGGCCAAGTCGCCGACAATCTCCC 120
Query 121 TCCTCCTTCAGAAACCGCCAAGCTCCTCCAATCCACTTCTATCCAGAAAGTTCGACTCTA 180
||| ||||||||||||| ||||||||||||||||||||| || |||||||||||||| ||
Sbjct 121 TCCGCCTTCAGAAACCGTCAAGCTCCTCCAATCCACTTCAATTCAGAAAGTTCGACTTTA 180
Query 181 CGGCGCCGATCCCGCCATCATCAAAGCTTTGGCCGGAACAGGGGTTGGTATCGTCATAGG 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 181 CGGCGCCGATCCCGCCATCATCAAAGCTTTGGCCGGAACAGGGGTCGGTATCGTCATCGG 240
Query 241 CGCTGCTAACGGCGACGTTCCTTCTCTCGCCTCCGATCCCAACGCCGCCACTCAATGGAT 300
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 241 CGCTGCTAACGGCGACGTTCCTTCTCTTGCCTCCGATCCTAACGCCGCTACTCAATGGAT 300
Query 301 CAACTCCAATGTCCTTCCTTTTTATCCCGCTTCCAAAATCATCCTCATCACCGTCGGCAA 360
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 301 CAACTCCAATGTCCTTCCTTTTTATCCCGCCTCCAAAATCATGCTCATCACCGTCGGCAA 360
Query 361 CGAGATTCTGATGTCGAACGATCCAAATCTGGTGAATCAGCTACTTCCGGCGATGCAAAA 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 CGAGATTCTGATGTCGAACGATCCAAATCTGGTGAACCAGCTACTTCCGGCGATGCAAAA 420
Query 421 TGTCCAAAAAGCCCTTGAGGCGGTGTCTCTCGGCGGGAAAATCATGGTCTCGACGGTGCA 480
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 421 TGTCCAAAAAGCCCTTGAGGCGGTGTCTCTCGGCGGGAAAATCAAGGTCTCGACGGTGAA 480
Query 481 CTCGATGACGGTGCTCGGTAGTTCAGACCCGCCATCGACCGGTTCATTTGCGGCCGGTTA 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 CTCGATGACGGTGCTCGGTAGTTCAGACCCGCCATCGAGCGGTTCATTTGCGGCCGGTTA 540
Query 541 TCAAACCGGTTTAAAAGGAATTTTGCAATTTCTAAGCGACACTGGTTCACCTTTTGCTAT 600
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 541 TCAAACCGGTTTAAAGGGAATTTTGCAATTTCTAAGCGACACTGGTTCGCCTTTTGCTAT 600
Query 601 TAATCCGTACCCGTTCTTCGCGTACCAAAGTGATCCGAGACCCGAAACGCTGTCGTTTTG 660
||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 601 TAACCCGTACCCGTTCTTCGCGTACCAAAGTGACCCGAGACCCGAAACGCTGGCGTTTTG 660
Query 661 CCT-TTTCCAGCCTAACGCCGGACGGGTCGACTCCAAAACCGGAATCAAGTACACGAACA 719
|| ||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 661 TCTCTTT-GAGCCTAACGCCGGACGAGTCGACTCCAAAACCGGAATCAAATACACGAACA 719
Query 720 TGTTCGATGCTCAGGTTGATGCGGTTCACTCGGCTTTGAAATCGATGGGATTCGAAAAGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 720 TGTTCGATGCTCAGGTTGATGCGGTTCACTCGGCTTTGAAATCGATGGGATTCGAGAAGG 779
Query 780 TGGAGATCGTGGTGGCGGAAACAGGTTGGGCGTCAAGAGGGGACGCTAACGAGGTTGGAG 839
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGGAGATTGTGGTGGCGGAAACAGGTTGGGCGTCAAGAGGGGACGCTAACGAGGTTGGAG 839
Query 840 CAAGCGTGGATAACGCCAAAGCTTACAACGGAAACCTAATAGCTCATCTAAGGTCTATGG 899
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 840 CAAGCGTGGATAACGCCAAAGCGTACAACGGAAACCTAATAGCTCATCTAAGGTCTATGG 899
Query 900 TTGGCACACCTCTCATGCCTGGAAAACCTGTTGACACTTACCTTTTCGCACTGTATGATG 959
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 900 TTGGCACACCTCTCATGCCTGGAAAACCTGTTGACACTTACATTTTCGCACTGTATGATG 959
Query 960 AGAATCTAAAGCCTGGACCTTCTTCAGAACGGGCTTTCGGGCTTTTCAAAACTGATCTTT 1019
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AGAATCTAAAGCCTGGACCATCTTCAGAACGGGCTTTCGGGCTTTTCAAAACTGATCTTT 1019
Query 1020 CCATGGTCTACGATGTAGGCCTTGCCAAGAGTAGCAGTAGTAGTCAG 1066
|||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 1020 CCATGGTCTATGATGTTGGCCTTGCCAAGAGTAGCAGCAGTAGTCAG 1066
> AT5G42720.1 | Symbols: | Glycosyl hydrolase family 17 protein
| chr5:17130186-17132843 FORWARD LENGTH=1746
Length=1746
Score = 206 bits (111), Expect = 5e-52
Identities = 672/933 (72%), Gaps = 77/933 (8%)
Strand=Plus/Plus
Query 80 TTCATCGGAGTTAACTACGGCC-AAGTCGCCGACAATCTCCCTCCTCCTTCAGAAACCGC 138
||| ||||||| |||||||||| || |||||||||||| || ||||| |||| | ||
Sbjct 422 TTCCTCGGAGTAAACTACGGCCTAA-CCGCCGACAATCTTCCACCTCCGTCAGCGAGTGC 480
Query 139 CAAGCTCCTCCAATCCACTTCTATCCAGAAAGTTCGACTCTACGGCGCCGATCCC-GCCA 197
|||||||| |||||||| || |||| ||||| || || ||||| |||| ||| ||
Sbjct 481 AAAGCTCCTTCAATCCACAACTTTCCAAAAAGTCCGTCTTTACGGATCCGA-CCCGGCTG 539
Query 198 TCATCAAAGCTTTGGCCGGAACA-GGGG-TTG-GTATCGTCATAGGCGCTG-CTAACGGC 253
| ||||| || | | | |||| |||| | | | |||||||| || || | ||||||||
Sbjct 540 TAATCAAGGCCCTAG-C-AAACACGGGGATCGAG-ATCGTCATCGGGGC-GTCTAACGGC 595
Query 254 GACGTTCCTTCTCTCGCCTCCGATCCC-AACGCCGCCACTCAA--TGGATC-AACTCCAA 309
|| || || ||| || || || ||| | |||| | || ||| || || ||||
Sbjct 596 GATGTACCCGGTCTAGCATCGGA-CCCGAGTTTCGCC-C-GAAGCTGGGTCGAA-ACCAA 651
Query 310 TGTCCTTCCTTTTTATCCCGCTTCCAAAATCATCCTCATCACCGTCGGCAACGAGAT-TC 368
|| | |||| |||||| || ||| || | ||||| |||| || || ||||| |
Sbjct 652 CGTGGTACCTTATTATCCAGCGAGCAAGATTGTTCTCATTGCCGTGGGAAATGAGATCAC 711
Query 369 -TGATGTCGAACGATCCAA-A-TCTGGTGAATCAGCTACTT-CCGGCGATGCAAAATGTC 424
| || ||| ||| ||| | ||| || ||||| || ||||||||| ||||||||
Sbjct 712 ATCAT-TCG-GCGA--CAACAGTCTCATGTCGCAGCT-TTTGCCGGCGATGAAAAATGTC 766
Query 425 CAAAAAGCCCTTGAGGCGGTGTCTC-T--CGGCGGGAAAATCATGGTCTCGACGGTGCAC 481
|||| ||||| ||||||| ||||| | ||||||||||||| |||||||| || |||
Sbjct 767 CAAACTGCCCTCGAGGCGGCGTCTCTTGGTGGCGGGAAAATCAAAGTCTCGACAGTACAC 826
Query 482 -TCGATGACGGTGCTCGGTAGTTCAGACCCGCCATCGACCG-GTTCATTTGCGGCCGGTT 539
| ||| |||| || | | |||||||| || ||||||| | | |||| ||||
Sbjct 827 AT-AATGTCGGTTCTAGCCGGGTCAGACCCTCCTTCGACCGCGGT-ATTT-AAACCGG-- 881
Query 540 ATCAAACCGGT-T-TAAAAGGAATTTTGC-A-A-TTTCTA-AGCGACACTGGTTCACCTT 593
| || | | | | | |||| | |||| | | ||| | || || || || || ||||
Sbjct 882 AGCATGCTGATATATTGAAGGGA--TTGCTAGAGTTT-AATAGTGAAACCGGGTCGCCTT 938
Query 594 TTGCTATTAATCCGTACCCGTTCTTCGCGTACCAAAG-TGATCC-GAGACCCGAAACGCT 651
| || |||| || |||||||| ||||| |||| ||| ||| || ||||||||||||| |
Sbjct 939 TCGCGGTTAACCCCTACCCGTTTTTCGCTTACC-AAGATGA-CCGGAGACCCGAAACGTT 996
Query 652 GTCGTTTTGCCTT-TTCCA-GCCTAACGCC-GGACGGGTCGACTCCAAAACCGGAA--TC 706
| | | ||| ||| || || ||| || || || || |||||| || ||| | || ||
Sbjct 997 GGCCTATTG-CTTGTTTCAGGCC-AA-TCCTGGCCGTGTCGAC-CC-CAACAGCAACCTC 1051
Query 707 AAGTACACGAACATGTTCGATGCTCAGGTTGATGCGGT-TCACTCGGCTTTGAAATCGAT 765
||||| | |||||||||||||||||||||||||||||| | | || |||||||| |||||
Sbjct 1052 AAGTATATGAACATGTTCGATGCTCAGGTTGATGCGGTGT-ATTCAGCTTTGAACTCGAT 1110
Query 766 GGGATTCGAAA-AGGTGGAGATCGTGGTGGCGGAAACAGGTTGGGCGT-CAAGAGGGGAC 823
||| ||| || | || ||||| |||| || || || || ||| | | |||| || |||
Sbjct 1111 GGGGTTC-AAGGACGTAGAGATAATGGTCGCTGAGACTGGATGGCCATACAAG-GGAGAC 1168
Query 824 GCTAACGAGGTTGGAGCAAGC-GTGGATAACGCCAAAGCTTACAACGGAAACCTAATAGC 882
| | |||| ||| |||| | || || ||||| | ||||||||| ||| || || ||
Sbjct 1169 CCGGAGGAGGCTGGTGCAA-CAGTTGAGAACGCTAGAGCTTACAATAAAAATCTCATTGC 1227
Query 883 TCATCTAAGGTCTATGGTT-GGCACACCTCTCATGCCTGGAAAACCTGTT-GACACTTAC 940
|||| ||| ||| ||| || || || || ||||| || | | || | ||||| |||
Sbjct 1228 TCATTTAAAATCTG-GGTCCGGGACGCCACTTATGCCCGGGAGAG-TGATCGACACATAC 1285
Query 941 CTT-TTCGCACTGTATGATGAGAATCTAAAGCC 972
|| |||||| |||| || |||||||| |||||
Sbjct 1286 -TTGTTCGCATTGTACGACGAGAATCTCAAGCC 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5