BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491213
Length=1588
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34460.1 | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein... 2357 0.0
> AT4G34460.1 | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein
beta 1 | chr4:16477106-16479528 REVERSE LENGTH=1683
Length=1683
Score = 2357 bits (1276), Expect = 0.0
Identities = 1480/1570 (94%), Gaps = 48/1570 (3%)
Strand=Plus/Plus
Query 1 TCTCTATCTAGTCTCAGGTCAGAG-AGCCATCATCAACATTCAACAAGAGAGCCGTGTTT 59
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 15 TCTCTAGCTAGTCTCAGGTCAGAGAAGCCATCATCAACATTCAACAAGAGAGCCGTGTTT 74
Query 60 GTTTGTGTCTGACTGATTCTTCTTCTCAAG------------CTC-CTCTTTTCCCACGT 106
| ||| | ||||||||||||| ||||||| ||| ||||||||||||||
Sbjct 75 G--TGTCT-TGACTGATTCTTC-TCTCAAGCTTTTTTAATCTCTCTCTCTTTTCCCACGT 130
Query 107 AATTCCCCCAAATCC-TCTCTTTCTAGGGTTCGATCTCCATCTCTCAATCATGAACCTTC 165
||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 131 AATTCCCCCAAATCCAT-TCTTTCTAGGGTTCGATCTCCCTCTCTCAATCATGAACCTTC 189
Query 166 TTCTCTTCTAGA-CCCGCAAAGTTTCCCCTTTTTCTTTGATCGGCGACGGAGAAGCCTAA 224
|||||||||||| ||| |||||||||||| |||| |||||||||||||||||||||||||
Sbjct 190 TTCTCTTCTAGACCCCACAAAGTTTCCCCCTTTTATTTGATCGGCGACGGAGAAGCCTAA 249
Query 225 GTCTGATCCCGGAATGTCTGTCTCCGAGCTCAAAGAACGTCACGCCGTCGCTACGGAGAC 284
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 250 GTCTGATCCCGGAATGTCTGTCTCCGAGCTCAAAGAACGCCACGCCGTCGCTACGGAGAC 309
Query 285 CGTTAATAACCTCCGTGACCAGCTTAGACAGAGACGCCTCCAGCTCCTCGATACCGATGT 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CGTTAATAACCTCCGTGACCAGCTTAGACAGAGACGCCTCCAGCTCCTCGATACCGATGT 369
Query 345 GGCGAGGTATTCAGCGGCGCAAGGACGTACTCGGGTGAGCTTCGGAGCAACGGATCTGGT 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GGCGAGGTATTCAGCGGCGCAAGGACGTACTCGGGTGAGCTTCGGAGCAACGGATCTGGT 429
Query 405 TTGTTGTCGTACTCTTCAGGGACACACCGGAAAGGTTTATTCATTGGATTGGACACCGGA 464
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 430 TTGTTGTCGTACTCTTCAGGGACACACCGGAAAGGTTTATTCATTAGATTGGACACCGGA 489
Query 465 GAGGAACCGTATTGTCAGCGCATCTCAAGATGGGAGATTAATCGTGTGGAATGCTCTAAC 524
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 490 GAGGAACCGGATTGTCAGTGCATCTCAAGATGGGAGATTAATCGTGTGGAATGCTCTAAC 549
Query 525 GAGTCAGAAAACTCATGCTATTAAACTCCCTTGTGCATGGGTTATGACATGTGCTTTCTC 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GAGTCAGAAAACTCATGCTATTAAACTCCCTTGTGCATGGGTTATGACATGTGCTTTCTC 609
Query 585 TCCAAATGGTCAGTCGGTTGCGTGTGGTGGATTAGACAGTGTGTGTTCTATCTTCAGCCT 644
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 610 TCCAAATGGTCAGTCGGTTGCGTGTGGTGGATTAGACAGTGTATGTTCTATCTTTAGCCT 669
Query 645 TAGCTCAACCGCGGACAAGGACGGAACTGTACCGGTTTCAAGAATGCTCACTGGTCACAG 704
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 670 TAGCTCAACGGCGGACAAGGATGGAACTGTACCGGTTTCAAGAATGCTCACTGGTCACAG 729
Query 705 GGGATATGTTTCGTGCTGTCAGTATGTCCCAAACGAGGATGCCCACCTTATCACCAGTTC 764
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 730 GGGATATGTTTCGTGCTGTCAGTATGTCCCAAATGAGGATGCCCACCTTATCACCAGTTC 789
Query 765 AGGTGATCAAACTTGTATCTTATGGGATGTGACTACTGGCCTCAAAACTTCAGTTTTTGG 824
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 790 AGGTGATCAAACTTGTATCTTATGGGATGTAACTACTGGTCTCAAAACTTCTGTTTTTGG 849
Query 825 TGGTGAATTTCAGTCTGGACATACTGCTGATGTACTAAGTGTCTCAATCAGTGGATCAAA 884
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 850 CGGTGAATTTCAGTCTGGACATACTGCTGATGTACTAAGCGTCTCAATCAGTGGATCAAA 909
Query 885 CCCAAATTGGTTCATATCTGGTTCATGTGATTCCACAGCACGGTTGTGGGACACTCGTGC 944
|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 910 CCCAAACTGGTTTATATCTGGTTCATGCGATTCCACAGCACGGTTGTGGGACACTCGTGC 969
Query 945 TGCAAGCCGAGCAGTGCGTACCTTTCATGGGCACGAGGGAGATGTTAATACGGTCAAGTT 1004
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 970 TGCAAGCCGAGCAGTGCGTACCTTTCATGGTCACGAGGGAGATGTTAATACGGTCAAGTT 1029
Query 1005 CTTTCCGGATGGGTATAGATTTGGGACTGGATCAGACGATGGCACATGCAGGTTGTATGA 1064
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1030 CTTTCCGGATGGGTATAGATTTGGGACTGGATCAGACGATGGAACATGCAGGCTGTATGA 1089
Query 1065 CATAAGGACTGGTCACCAACTCCAGGTCTATCAGCCACATGGTGATGGTGAGAACGTACC 1124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1090 CATAAGGACTGGTCACCAACTCCAGGTCTATCAGCCACATGGTGATGGTGAGAACGGACC 1149
Query 1125 TGTCACCTCCATTGCATTCTCTGTCTCAGGGAGACTTCTTTTCGCTGGCTATGCCAGCAA 1184
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1150 TGTCACCTCCATTGCATTCTCTGTGTCAGGGAGACTTCTTTTCGCTGGCTATGCGAGCAA 1209
Query 1185 CAACACTTGCTACGTTTGGGATACTCTTTTGGGAGAGGTTGTATTGGATTTGGGATTACA 1244
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1210 CAACACTTGCTACGTTTGGGATACCCTCTTGGGAGAGGTTGTATTGGATTTGGGATTACA 1269
Query 1245 GCAGGATTCACACAAGAATCGGATAAGCTGTTTGGGGTTGTCAGCAGATGGAAGTGCCTT 1304
|||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1270 GCAGGATTCACACAGGAATAGAATAAGCTGTTTGGGGTTGTCAGCAGATGGAAGTGCCTT 1329
Query 1305 GTGTACAGGAAGTTGGGATTCAAATCTAAAGATATGGGCGTTTGGAGGGCACAGGAGAGT 1364
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1330 GTGTACAGGAAGTTGGGATTCAAATCTAAAGATATGGGCGTTTGGAGGACACAGGAGAGT 1389
Query 1365 GATTTGAAGAAGATT-AAC-AAACGTAGGAGTCATGTCTCCAGTTGTGGTGGTGGTTGGT 1422
||||||||||||||| ||| ||| |||||||||| |||||||||||| |||| |
Sbjct 1390 GATTTGAAGAAGATTTAACGAAA-GTAGGAGTCACGTCTCCAGTTGT--TGGT--T---- 1440
Query 1423 TAATATATTCTGTAATTGGGAAGTAAGGT-CGCGATATGTGGAAGAACGGAAGGTGTTTG 1481
||||||||||||| | |||||||||||| || | | |||||||| | ||||||
Sbjct 1441 -AATATATTCTGTAGTCGGGAAGTAAGGTTCG-GTT-TGTGGAAG---G-----TGTTTG 1489
Query 1482 GTTTGAAATAGTGGAGTGGTTAGAAGGATCAAACTTCCCTTGTTGTTAAGTGTGTGCTTT 1541
|||||||||||||||||||||||||| || ||||||||||| |||| | ||||| ||||
Sbjct 1490 GTTTGAAATAGTGGAGTGGTTAGAAGAATTAAACTTCCCTTTTTGT-A-GTGTG--CTTT 1545
Query 1542 GATTTATTTA 1551
||||||||||
Sbjct 1546 GATTTATTTA 1555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78413251290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5