BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491217
Length=2989
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34450.1 | Symbols: | coatomer gamma-2 subunit, putative / ... 4944 0.0
AT2G16200.2 | Symbols: | structural molecules | chr2:7024607-7... 150 6e-35
> AT4G34450.1 | Symbols: | coatomer gamma-2 subunit, putative
/ gamma-2 coat protein, putative / gamma-2 COP, putative | chr4:16471835-16477021
FORWARD LENGTH=3008
Length=3008
Score = 4944 bits (2677), Expect = 0.0
Identities = 2893/2996 (97%), Gaps = 20/2996 (1%)
Strand=Plus/Plus
Query 1 ATTACAGATCTTCTTCCTTCTCCTGTTGCATCTGAAGATTAAGGTAACAGAAA--GCGAG 58
|||| ||||||||||| |||||||||||||||||||||| |||| |||||||| |||||
Sbjct 16 ATTAGAGATCTTCTTCTTTCTCCTGTTGCATCTGAAGATAAAGGAAACAGAAAGCGCGAG 75
Query 59 ATCTGAGTGACGGAGTAATTTCAAAGGGAGGTTTTCGAGATCAGCAATGGCGCAACCCCT 118
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 76 ATCTGAGTGACGGAGTAATTTCAAAGGGAGGTTTTCGAGATCAGAAATGGCGCAACCCCT 135
Query 119 TGTGAAGAAAGACGATGATCACGACGATGAGTTGGAGTATTCTCCATTCATGGGAATTGA 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 CGTGAAGAAAGACGATGATCACGACGATGAGTTGGAGTATTCTCCATTCATGGGAATTGA 195
Query 179 GAAAGGAGCGGTACTTCAAGAAGCTAGAGTCTTTAATGACCCTCAGGTTGATCCTAGACG 238
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 196 GAAAGGAGCGGTTCTTCAAGAGGCTAGAGTCTTTAATGACCCTCAGGTTGATCCTAGACG 255
Query 239 ATGCTCCCAGGTCATCACCAAGCTTCTTTATTTGCTTAACCAAGGGGAGTCATTCACCAA 298
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 256 ATGCTCCCAGGTCATTACGAAGCTTCTTTATTTGCTTAACCAAGGGGAGTCATTCACCAA 315
Query 299 GGTCGAAGCAACGGAAGTTTTCTTTTCAGTTACAAAGCTTTTTCAATCAAAAGACACAGG 358
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 316 GGTTGAAGCAACGGAAGTTTTCTTTTCAGTTACAAAGCTTTTTCAATCAAAAGACACGGG 375
Query 359 TTTGAGGAGAATGGTCTACTTGATCATTAAGGAGTTATCTCCATCATCTGATGAGGTTAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 TTTGAGGAGAATGGTCTACTTGATCATTAAGGAGTTATCTCCATCATCTGATGAGGTTAT 435
Query 419 CATTGTAACAAGCTCCCTGATGAAGGATATGAACAGTAAAATTGATATGTATCGAGCAAA 478
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 436 CATCGTAACAAGCTCTCTGATGAAGGATATGAATAGTAAAATTGATATGTATCGAGCAAA 495
Query 479 TGCTATTCGTGTCCTCTGCCGGATAATAGACGGAACCCTTCTCACTCAAATTGAGCGATA 538
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 496 TGCTATCCGTGTCCTCTGCCGGATAATAGACGGAACCCTTCTCACTCAGATTGAGCGATA 555
Query 539 CTTGAAACAAGCCATTGTGGATAAGAATCCCGTTGTTTCTAGTGCAGCTTTAGTCAGTGG 598
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 556 CTTGAAACAAGCCATTGTGGATAAGAATCCCGTTGTTTCAAGTGCAGCTTTAGTCAGTGG 615
Query 599 GCTTCACTTGCTAAAGACAAACCCAGAAATTGTTAAAAGATGGAGCAATGAGGTTCAAGA 658
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 616 GCTTCACTTGCTCAAGACAAACCCAGAAATTGTTAAAAGATGGAGCAATGAAGTTCAAGA 675
Query 659 AGGTATTCAATCCAGATCAGCCCTTGTTCAGTTCCATGCCCTAGCTTTGCTCCATCAGAT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 AGGTATTCAATCCAGATCAGCCCTTGTTCAGTTCCATGCCCTAGCTTTGCTCCATCAGAT 735
Query 719 ACGCCAAAATGATCGCTTGGCTGTCAGCAAGTTGGTTGGCAGCTTGACCAGGGGATCTGT 778
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 736 ACGCCAAAATGATCGCTTGGCTGTTAGCAAATTGGTTGGTAGCTTGACCAGGGGATCTGT 795
Query 779 CCGCTCCCCCTTGGCTCAGTGTCTTTTGATACGTTACACCAGCCAGGTTATCCGTGACAT 838
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 CCGCTCTCCCTTGGCTCAGTGTCTTTTGATACGTTACACCAGCCAGGTTATCCGTGACAT 855
Query 839 GGCCAACCACGGTCAGTCTGGAGAACGTCCGTTCTATGAATTTTTGGAGAGTTGCCTGCG 898
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GGCCAACCACGGTCAATCTGGAGAACGTCCGTTCTATGAATTTTTGGAGAGTTGCCTGCG 915
Query 899 CCATAAGGCAGAAATGGTGATCCTTGAGGCTGCCAGGGCGATCACTGAGCTTGATGGTGT 958
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 916 CCATAAGGCAGAAATGGTGATCCTTGAGGCTGCCAGGGCAATTACTGAGCTTGATGGTGT 975
Query 959 GACAAGCCGAGAACTGACTCCAGCAATCACTGTTCTTCAGCTCTTTTTGAGTTCCCCCAG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 GACAAGCCGAGAACTGACTCCAGCAATCACTGTTCTTCAGCTCTTTTTGAGTTCCCCCAG 1035
Query 1019 ACCAGTGTTGAGATTTGCTGCTGTCCGGACTCTGAACAAGGTTGCAATGACTCATCCTAT 1078
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 ACCAGTGTTGAGATTTGCCGCTGTCCGGACTCTGAACAAGGTTGCAATGACTCATCCTAT 1095
Query 1079 GGCTGTCACCAACTGCAACATTGATATGGAGAGCTTAATCTCTGATCAGAATAGAAGCAT 1138
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1096 GGCTGTCACCAACTGCAACATTGATATGGAGAGTTTAATCTCTGATCAAAATAGAAGCAT 1155
Query 1139 TGCTACACTCGCAATAACCACACTCTTGAAAACAGGGAACGAATCAAGTGTAGAACGCTT 1198
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1156 TGCTACACTCGCAATAACCACACTATTGAAAACAGGGAACGAATCAAGTGTAGAACGTTT 1215
Query 1199 GATGAAGCAGATAACTAATTTTATGTCAGATATTGCTGATGAGTTCAAAATTGTGGTCGT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 GATGAAGCAGATAACTAATTTTATGTCAGATATTGCTGATGAGTTCAAAATTGTGGTCGT 1275
Query 1259 GGAAGCAATAAGATCGTTGTGTGTGAAATTTCCACTGAAATACAGATCCTTGATGACCTT 1318
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1276 GGACGCAATAAGATCGTTGTGTGTGAAATTCCCACTGAAATACAGATCCTTGATGACCTT 1335
Query 1319 CTTAAGCAACATTCTTAGGGAAGAAGGTGGATTTGAGTATAAAAGAGCAATAGTAGATTC 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 CTTAAGCAACATTCTTAGGGAAGAAGGTGGATTTGAGTATAAAAGAGCAATAGTAGATTC 1395
Query 1379 TATTGTGACCATTATCAGAGATATTCCTGATGCAAAGGAAAGTGGATTGCTTCATCTTTG 1438
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||
Sbjct 1396 TATTGTGACCATTATCAGAGATATTCCGGATGCAAAGGAAAGTGGACTGCTTCATCTATG 1455
Query 1439 TGAATTCATTGAAGATTGTGAATTCACATATCTTTCAACACAGGTAATTCTTCATTTTCT 1498
|||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 1456 TGAATTCATTGAAGATTGTGAATTCACATATCTTTCAACACA-G--ATCCTTCATTTTCT 1512
Query 1499 GGGAATTGAGGGGCCTAACACCTCAGATCCAAGCAAGtatatacgatatatatataATCG 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 GGGAATTGAGGGGCCTAACACCTCAGATCCAAGCAAGTATATACGATATATATATAATCG 1572
Query 1559 TGTGCATCTAGAAAATGCCACTGTCCGGGCTGCGGCTGTTTCCACACTTGCAAAGTTTGG 1618
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1573 TGTGCATCTAGAAAACGCCACTGTCCGGGCTGCTGCTGTTTCCACACTTGCAAAGTTTGG 1632
Query 1619 GTTTATGGTTGAATCCTTGAAGCCCCGGATTACTGTTCTGTTGAAGCGTTGCATCTATGA 1678
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1633 GTTTATGGTTGAATCCTTGAAGCCCCGGATTACTGTTCTATTGAAGCGTTGCATCTATGA 1692
Query 1679 CAGTGATGATGAGGTCCGTGATAGGGCAACACTATATTTGAGTGTTCTTGGTGGTGATGG 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 CAGTGATGATGAGGTCCGTGATAGGGCAACACTATATTTGAGTGTTCTTGGTGGTGATGG 1752
Query 1739 TACTGTTGACACTGATAAAGAGAGCAAGGATTTCCTATTTGGTTCCCTGGAGGTTCCTCT 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 TACTGTTGACACTGATAAAGAGAGCAAGGATTTCCTATTTGGTTCCCTGGAGGTTCCTCT 1812
Query 1799 GGTCAACATGGAAACTAGTCTGAAGAATTATGAGCCCTCTGAAGAAGCTTTTGATATCAA 1858
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1813 AGTCAACATGGAAACTAGTCTGAAGAATTATGAGCCCTCTGAAGAAGCTTTTGATATCAA 1872
Query 1859 CTCCGTGCCTAAGGAAGTTAAATCCCAGCCCCTTGCAGAGAAGAAAGCCCAGGGTAAAAA 1918
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1873 CTCCGTACCTAAGGAAGTTAAATCTCAGCCCCTTGCAGAGAAGAAAGCCCAGGGTAAAAA 1932
Query 1919 GCCCACTGGTCTTGGTGCGCCACCAGCTGCACCTGCTTCTGGTTTTGATGGCTATGAAAA 1978
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1933 GCCCACTGGTCTTGGTGCACCACCAGCTGCACCTGCTTCTGGTTTTGATGGCTATGAAAG 1992
Query 1979 ACTTCTCTCATCTATTCCAGAGTTTACCGCCTTTGGAAAACTTTTCAAGGTTAGGGCTTC 2038
|||||||||||| |||||||||||| ||||||||||||||||||||||| | ||||
Sbjct 1993 ACTTCTCTCATCCATTCCAGAGTTTGCCGCCTTTGGAAAACTTTTCAAG-T-----CTTC 2046
Query 2039 TTTACCTGTGGAGCTAACTGAAGCAGAAACAGAATACGCCGTCGATGTTGTTAAGCATAT 2098
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 2047 TTTACCTGTGGAGCTAACTGAAGCAGAAACAGAATACGCTGTCAATGTTGTTAAGCATAT 2106
Query 2099 CTTTGACAGTCATGTGGTGTTTCAGTACAACTGCACTAACACAATACCAGAGCAGTTGTT 2158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2107 CTTTGACAGTCATGTGGTGTTTCAGTACAACTGCACTAACACAATACCAGAGCAGTTGTT 2166
Query 2159 GGAGAGGGTCAATGTCATTGTAGATGCTTCAGAAGCAGAGGAATTCAGTGAAGTAACTTC 2218
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2167 GGAGAGGGTCAATGTCATTGTAGATGCTTCAGAAGCTGAGGAATTCAGTGAAGTAACTTC 2226
Query 2219 AAAGGCCCTAAACTCACTTCCTTATGATTCACCCGGTCAAGCCTTTGTGGTTTTTGAGAA 2278
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2227 AAAGGCCCTAAACTCACTTCCTTACGATTCACCCGGTCAAGCCTTTGTGGTTTTTGAGAA 2286
Query 2279 ACCAGCTGGGGTCCCTGCTATTGGAAAGTTCTCCAACACATTGACTTTCGTTGTTAAGGA 2338
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2287 GCCAGCTGGGGTCCCTGCTGTTGGAAAGTTCTCCAACACATTGACTTTCGTTGTTAAGGA 2346
Query 2339 GGTTGACCCAAGCACAGGTGAAGCAGAAGATGATGGAGTAGAAGATGAATACCAGCTAGA 2398
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2347 GGTTGACCCAAGCACAGGTGAAGCAGAAGATGATGGAGTAGAAGATGAGTACCAGCTAGA 2406
Query 2399 GGATCTTGAGGTTGTAGCTGGAGATTACATGGTGAAAGTGGGTGTCTCCAATTTCAGGAA 2458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2407 GGATCTTGAGGTTGTAGCTGGAGATTACATGGTGAAAGTGGGTGTCTCCAATTTCAGGAA 2466
Query 2459 TGCATGGGAAAGCTTGGATGAAGAAGATGAGCGCGTCGACGAATATGGCCTTGGCCAAAG 2518
||| ||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2467 TGCGTGGGAAAGCATGGATGAAGAAGATGAGCGTGTAGACGAATATGGCCTTGGCCAAAG 2526
Query 2519 AGACAGTTTGGGAGAAGCTGTAAAAGCTGTCATCGATCTTCTTGGCATGCAGACTTGTGA 2578
||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2527 AGAGAGTTTGGGAGAAGCTGTAAAGGCTGTCATGGATCTTCTTGGCATGCAGACTTGTGA 2586
Query 2579 GGGGACGGAGACAATTCCGCTCAATGCAAGGTCACACACGTGTCTATTGTCTGGTGTGTA 2638
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2587 GGGGACGGAGACAATTCCGCTCAATGCAAGGTCACACACGTGTCTATTGTCAGGTGTGTA 2646
Query 2639 CATAGGGAACGTGAAAGTGTTAGTGAGGGCACAGTTTGGAATGGACAGCTCAAAGGACAT 2698
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2647 CATAGGCAACGTGAAAGTGTTAGTGAGGGCACAGTTTGGAATGGACAGCTCAAAGGACAT 2706
Query 2699 TGCAATGAAGCTGACAGTTAGAGCTGAGGACGTTTCTGTAGCCGAGGCCATTCACGAGAT 2758
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 2707 TGCAATGAAGCTGACAGTTAGAGCTGAAGACGTTTCTGTCGCCGAGGCCATTCACGAGAT 2766
Query 2759 TGTTGCCAGCGGCTAAA-CCTCTCGCGTTTCTTCAATATCAAAAGAGTGTTA-CTATTCC 2816
||||||||||||||||| ||||| ||||||||||| ||||| | || ||| | |||||||
Sbjct 2767 TGTTGCCAGCGGCTAAAACCTCTTGCGTTTCTTCAGTATCAGA-GAATGTCATCTATTCC 2825
Query 2817 TACTGCTAAAACCTCAAAA-TACATCAACTATTATAAATAGTATAGTAttt-tttatttc 2874
| |||||||| |||||||| ||||||||||||||||||||| |||||||| ||| ||||
Sbjct 2826 TGCTGCTAAA-CCTCAAAAATACATCAACTATTATAAATAGCATAGTATTACTTTCTTTC 2884
Query 2875 tttttttCTTGCATTATTACTGTCAAATACACTTATGGAAGttttcgttttattatt-tg 2933
|||||| |||||||||||||||||||||||||| ||||| |||||| ||||||| || ||
Sbjct 2885 TTTTTTCCTTGCATTATTACTGTCAAATACACT-ATGGAGGTTTTCTTTTTATT-TTATG 2942
Query 2934 acggtgttttttgatttttcattgctgaattttgtcattacccgttttCTCGCCAA 2989
|||||| |||||||||| ||||| ||||||||| | ||||||||||||||||||||
Sbjct 2943 ACGGTGCTTTTTGATTTCTCATTTCTGAATTTTATTATTACCCGTTTTCTCGCCAA 2998
> AT2G16200.2 | Symbols: | structural molecules | chr2:7024607-7025231
FORWARD LENGTH=432
Length=432
Score = 150 bits (81), Expect = 6e-35
Identities = 148/180 (82%), Gaps = 6/180 (3%)
Strand=Plus/Plus
Query 2600 CAATGCAAGGTCACACACGTGTCTATTGTCTGGTGTGTACATAGGGAACGTGAAAGTGTT 2659
||| ||||| |||||||| ||| || || ||| |||| ||||||||||||||||||||
Sbjct 131 CAACGCAAGATCACACACATGTTTACCATCAGGTTTGTATATAGGGAACGTGAAAGTGTT 190
Query 2660 AGTGAGGGCACAGTTTGGAATGGACAGCTCAAAGGACATTGCAATGAAGCTGACAGTTAG 2719
|||| |||||||||||||||||||||||||||||| |||| |||||| ||| | ||| |
Sbjct 191 GGTGAAGGCACAGTTTGGAATGGACAGCTCAAAGGAAATTGTAATGAAACTGGCTGTTCG 250
Query 2720 AGCTGAGGA-CGTTTCTGT-AGCCGAGGCCATTCACG-AGATTGTTGCCAGCGGCTAAAC 2776
||| ||||| | | |||| ||| || || ||||||| | ||||||| | |||||||||
Sbjct 251 AGCAGAGGATCCAT-CTGTCAGC-GATGCGATTCACGCAC-TTGTTGCTAACGGCTAAAC 307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148594485166
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5