BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491219
Length=3390
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34430.4 | Symbols: CHB3, ATSWI3D | DNA-binding family prote... 5173 0.0
> AT4G34430.4 | Symbols: CHB3, ATSWI3D | DNA-binding family protein
| chr4:16460920-16465323 FORWARD LENGTH=3440
Length=3440
Score = 5173 bits (2801), Expect = 0.0
Identities = 3234/3435 (94%), Gaps = 61/3435 (2%)
Strand=Plus/Plus
Query 1 AAAAATGCAAAAACGGTGAAGGGGAAGAGAAGCGAAATT-GGGGATTGGGAATAGCAACG 59
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 8 AAAAATGCAAAAACGGTGAAGGGGAAGAGAAGCGAAATTGGGGGATTGGGAATAGCAACG 67
Query 60 TTTTGCAAATGGTCTCTCCTTTGTAGCTGCAATTGCGAAG-ACGCTgagagaga-a-aga 116
||||||||||||||||| |||||||||||||||||| ||| || |||||||||| | |||
Sbjct 68 TTTTGCAAATGGTCTCTTCTTTGTAGCTGCAATTGCAAAGAACACTGAGAGAGAGAGAGA 127
Query 117 ------gag-aacctttgagagatggaggagaAACGACGCGATTCTGCTGGAACCCTAGC 169
| | ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 128 GTGTGTGTGTGACCTTTGAGAGATGGAGGAAAAACGACGCGATTCTGCTGGAACCCTAGC 187
Query 170 TTTTGCTGGTAGCTCTGGAGATTCTCCGGCATCTGAGCCGATGCCGGCGCCACGGCGACG 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 TTTTGCTGGTAGCTCTGGAGATTCTCCGGCATCTGAGCCGATGCCGGCGCCACGGCGACG 247
Query 230 CGGCGGAGGTTTGAAAAGAAAAGCGAATGCTCTCGGGGGTTCTAATTTCT-CATCTTCTA 288
|||||||||||||||||| |||||||||||||| |||||||||||||||| | ||||||
Sbjct 248 CGGCGGAGGTTTGAAAAGGAAAGCGAATGCTCTTGGGGGTTCTAATTTCTTC-TCTTCTG 306
Query 289 CGCCGTCTAAGAGGATGTTGACGCGTGAAAAGGCGATGCTTGCGTCTTTTTCTCCGGTAC 348
||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 307 CGCCGTCGAAGAGGATGTTGACGCGTGAGAAGGCGATGCTTGCTTCTTTTTCTCCGGTAC 366
Query 349 ATAATGGGCCTTTAACTAGAGCTCGTCAGGCGCCGAGTATTATGCCCTCGGCGGCGGATG 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 ATAATGGGCCTTTAACTAGAGCTCGTCAGGCGCCGAGTATTATGCCCTCGGCGGCGGATG 426
Query 409 GGGTTAAGTCGGAGCTTTTGAATGTTGCGGTGGGTACGGATGGAGAGAAGCCCAAGGAGG 468
|||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 427 GGGTTAAGTCGGAGGTTTTGAATGTAGCGGTGGGTGCGGATGGAGAGAAGCCCAAGGAGG 486
Query 469 AGGAAGAGAGGAATAAGGCGATCCGTGAGTGGGAGGCTTTGGAGGCTAAGATCGAAGCTG 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 AGGAAGAGAGGAATAAGGCGATCCGTGAGTGGGAGGCTTTGGAGGCTAAGATCGAAGCTG 546
Query 529 ATTTCGAAGCAATTAGATCTCGTGACAGTAATGTTCATGTGGTGCCTAATCATTGCGGTT 588
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 ATTTTGAAGCAATTAGATCTCGTGACAGTAATGTTCATGTGGTGCCTAATCATTGCGGTT 606
Query 589 GGTTTTCATGGGAAAAAATTCACCCGCTTGAGGAGCGTTCATTGCCCTCTTTCTTTAATG 648
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 607 GGTTTTCATGGGAAAAAATTCACCCGCTTGAGGAACGTTCATTGCCCTCTTTCTTCAATG 666
Query 649 GCAAGTTGGAAGGTCGCACTTCTGAGGTTTATAGGGAAATACGGAATTGGATCATGAGGA 708
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 667 GCAAGTTGGAGGGTCGCACTTCTGAGGTATATAGGGAAATACGGAATTGGATCATGGGGA 726
Query 709 AGTTTCATTCCAATCCGAACATACAAATAGAACTAAAAGACTTAACAGAACTCGAGGTTG 768
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 727 AGTTTCATTCCAATCCAAACATACAAATAGAATTAAAAGACTTAACAGAACTCGAGGTTG 786
Query 769 GAGACTCGGAGGCAAAGCAAGAGGTGATGGAGTTCTTGGATTACTGGGGCTTAATCAATT 828
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 787 GAGACTCGGAAGCAAAGCAAGAGGTGATGGAGTTCTTGGACTACTGGGGCTTAATCAATT 846
Query 829 TCCACCCATTTCCACCAACAGATGCTGGTTCTACT-CCTTCTGATCATGATGACTCAGGG 887
||||||||||||||||||||||| ||||||| || ||| ||||||||||||| | ||||
Sbjct 847 TCCACCCATTTCCACCAACAGATACTGGTTCAACAGCCT-CTGATCATGATGATTTAGGG 905
Query 888 GATAAGGAGTCACTGCTTAACAGTTTATATCGATTTCAAGTTGATGAGGCTTGCCCTCCT 947
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 906 GATAAGGAGTCACTGCTTAACAGTTTATATCGATTTCAAGTAGATGAGGCTTGCCCTCCT 965
Query 948 CTTGTTCCCAAGCCTCGTCTCACAGCACAAGCTACACCATCAGGATTGTTTCCAGATCCG 1007
||||||| |||||||||| |||||||||||||||| |||||||| |||||||| ||||||
Sbjct 966 CTTGTTCACAAGCCTCGTTTCACAGCACAAGCTACTCCATCAGGGTTGTTTCCTGATCCG 1025
Query 1008 GTGGCTGCTGATGAATTGCTGAAGCAAGAGGGTCCAGCGGTCGAATATCACTGCAATTCC 1067
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1026 ATGGCTGCTGATGAATTGCTGAAACAAGAGGGTCCAGCGGTCGAATATCACTGCAATTCC 1085
Query 1068 TGTTCAGCTGATTGCTCTCGCAAACGCTACCACTGCCCGAAACAGGCAGATTTTGACTTA 1127
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1086 TGTTCAGCTGATTGCTCTCGCAAGCGCTACCACTGCCCGAAACAGGCAGATTTTGACTTA 1145
Query 1128 TGCACGGAATGCTTTAACAGCGGCAAGTTCAGTTCAGACATGTCATCATCTGATTTTATA 1187
|||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1146 TGCACGGAATGCTTTAACAGTGGCAAGTTCAGCTCAGATATGTCATCTTCTGATTTTATA 1205
Query 1188 CTAATGGAGCCTGCTGAGGCCCCTGGCGTTGGTAGTGGGAAGTGGACTGATCAAGAGACT 1247
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 CTAATGGAACCTGCTGAGGCCCCTGGCGTTGGTAGTGGGAAGTGGACTGATCAAGAGACT 1265
Query 1248 CTTCTTCTCCTTGAAGCTTTAGAAATCTTCAAGGAAAACTGGAATGAGATTGCAGAGCAT 1307
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1266 CTTCTTCTCCTTGAAGCTTTAGAAATCTTCAAGGAAAATTGGAATGAGATTGCAGAGCAT 1325
Query 1308 GTTGCTACAAAAACAAAAGCTCAGTGTATGCTTCATTTTCTTCAAATGCCAATCGAAGAT 1367
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1326 GTTGCTACAAAAACAAAAGCTCAGTGTATGCTTCATTTTCTTCAAATGCCAATCGAGGAT 1385
Query 1368 GCATTTCTTGATCAAATTGAATACAAAGATCCAAGCTCAAAAGACACTACAGATTTAGCT 1427
|| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1386 GCGTTTCTTGATCAAATTGACTACAAAGATCCAATCTCAAAAGACACTACAGATTTAGCT 1445
Query 1428 GTGTTTAAAGAGGATAAATCTGTCCT-AAAGGATGCACCTGAAGAGGCAGAGAATAAGAA 1486
|||| |||||| ||||| |||||||| |||| |||||||||||||||||||||| |||||
Sbjct 1446 GTGTCTAAAGATGATAATTCTGTCCTTAAAG-ATGCACCTGAAGAGGCAGAGAACAAGAA 1504
Query 1487 ACGTGTTAATGAAGATGAAACTATGATGGAAGTTCCAGAACCAGAAGATGGCAATGAAGA 1546
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1505 ACGTGTTGATGAAGATGAAACTATGAAAGAAGTTCCAGAACCAGAAGATGGCAATGAAGA 1564
Query 1547 AAAAGTCTCTCACGAATCTTCGAAGCCTGGAGATGCGAGTGAAGAAACCAATGAAGTGGA 1606
|||||||||||| |||||||| |||||||||||||||||||||||||| |||||| ||||
Sbjct 1565 AAAAGTCTCTCAGGAATCTTCAAAGCCTGGAGATGCGAGTGAAGAAACTAATGAAATGGA 1624
Query 1607 AGCAGAGCAGAAAACACCCAAACTAGAGACTGTCATTGATGAAAGATCTAATGATGAGGC 1666
||||||||||||||||||||| ||||||| | |||||| ||||||| ||| ||||||||
Sbjct 1625 AGCAGAGCAGAAAACACCCAAGTTAGAGACCGCCATTGAAGAAAGATGTAAAGATGAGGC 1684
Query 1667 TGATGAAAACATTGCTCTGAAAGCTCTTGCTGAAGCTTTTGAAGATGTTGGTTATTCCTC 1726
||| |||||||||||||||||||||||| ||||||||||||| |||||||| |||||||
Sbjct 1685 TGACGAAAACATTGCTCTGAAAGCTCTTACTGAAGCTTTTGAGGATGTTGGACATTCCTC 1744
Query 1727 CACACCTGAAGCCTCTTTTTCCTTTGCTGATTTAGGAAACCCTGTCATGGGACTGGCAGC 1786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 CACACCTGAAGCCTCTTTTTCCTTTGCTGATTTAGGAAACCCTGTCATGGGACTGGCAGC 1804
Query 1787 ATTTCTGGTGAGATTGGCAGGATCTGATGTTGCTACTGCATCAGCCCGGGCTTCTATAAA 1846
||||| |||||||||||||||||||||||||||||||| ||||| |||||||| || ||
Sbjct 1805 CTTTCTAGTGAGATTGGCAGGATCTGATGTTGCTACTGCGTCAGCTCGGGCTTCCATTAA 1864
Query 1847 ATCTCTTCACAGCAAGTCTGG-ACTGTTGCTTGCTACAAGACATTGTTATATTCTGGAAG 1905
||||||||||||||| ||||| | |||||||||| ||| |||||||||||||||||||||
Sbjct 1865 ATCTCTTCACAGCAATTCTGGGA-TGTTGCTTGCCACACGACATTGTTATATTCTGGAAG 1923
Query 1906 ATCCACCAGACAACAAGAAGGATCCAACTGAATCAAAAAGT-GC-G-G---ATGCAAATG 1959
||||||||||||||||||||||||||||| ||||||||||| || | | ||||| | |
Sbjct 1924 ATCCACCAGACAACAAGAAGGATCCAACTAAATCAAAAAGTTGCAGTGCTGATGCAGAGG 1983
Query 1960 GGAATGATGATAATGTCC-ATAAAGACGAGCAGCCAGAAGAAAAAAGCCAAAAAGCAGAA 2018
|||||||||||||| ||| ||||||| || |||||||||||||||||| |||||||||||
Sbjct 1984 GGAATGATGATAAT-TCCCATAAAGATGATCAGCCAGAAGAAAAAAGCAAAAAAGCAGAA 2042
Query 2019 GAGGTTTCCTTGAATTCAGATGATAAGGAAATGCCAGATACTGATACAGGCAAAGAAAAT 2078
||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 2043 GAGGTCTCCTTAAATTCAGATGATAGGGAAATGCCAGATACTGATACAGGCAAAGAAACT 2102
Query 2079 CAGGATTCAGTCTCTGAAGAAAAGCAACCTGGTTCTCGAACTGAAAATTCTACTACAAAA 2138
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2103 CAGGATTCAGTCTCTGAAGAAAAGCAACCCGGTTCTCGAACTGAAAATTCTACTACAAAA 2162
Query 2139 CCAGATG-TCGTACAAGAAAAAAGATCTAGTAAGCCAATAACAACTGACAATTCAGGGAA 2197
| ||||| | || |||||||||||||||||||||||| | |||||||||||||| | |||
Sbjct 2163 CTAGATGCT-GTGCAAGAAAAAAGATCTAGTAAGCCAGTTACAACTGACAATTCTGAGAA 2221
Query 2198 ACCAGCGGATATAATATGTCCGTCGCAGGACAAATGTTCAGGGAAGGAGCTTCAAGAACC 2257
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2222 ACCAGTGGATATAATATGTCCGTCGCAGGACAAATGTTCAGGGAAGGAGCTTCAAGAACC 2281
Query 2258 TTTGAAGGATGGGATTAAGCTTTCTAGTGAAAATAAAGACGCCTCTCAAG-CAACTGTCT 2316
|||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 2282 TTTGAAGGATGGGAATAAGCTTTCTAGTGAAAATAAAGACGCCTCTCA-GTCAACTGTCT 2340
Query 2317 CCCTGTCAGGTGAAGATGCTTCTCAGCCAAAAGCATCAAGAGATGTGGAAATGAAGGATA 2376
||| ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2341 CCCAGTCAGCTGCAGATGCTTCTCAGCCAGAAGCATCAAGAGATGTGGAAATGAAGGATA 2400
Query 2377 -TACTACAGGCAGAGAAGGATCCTCTAGATGTGGTCAAAACAGTAGAAGAGGAGGTTCAA 2435
| |||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 2401 CT-CTACAGTCAGAGAAGGATCCTGAAGATGTGGTCAAAACAGTAGGAGAAAAGGTTCAA 2459
Query 2436 CAGGCTAAGGAGGAGGGTGCAAAGGATGTTCTTAGTACTCCAGACATGTCACTTTCACAG 2495
| ||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||
Sbjct 2460 CTGGCTAAGGAGGAGGGTGCAAATGATGTTCTTAGTACTCCAGACAAGTCTGTTTCACAG 2519
Query 2496 CAGCCCATTGGATCAGCTTCTGCACCGGAAAATGGAACAG--G-TGAAAATCAAAATAAA 2552
|||||||||||||||||||||||||||||||||||||||| | || ||||| ||||| |
Sbjct 2520 CAGCCCATTGGATCAGCTTCTGCACCGGAAAATGGAACAGCTGGTGGAAATCCAAATATA 2579
Query 2553 GAAGGAAAGAAAGAGAAGGATGTTTGTGAAGGGACAAAAGACAAACATAACATCGAGAAG 2612
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 2580 GAAGGAAAGAAAGAGAAGGATATTTGTGAAGGGACAAAAGACAAATATAACATCGAGAAG 2639
Query 2613 CTTAAGCGCGCAGCCATCTCTGCTATCTCAGCTGCAGCAGTAAAGGCAAAGAATCTTGCA 2672
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2640 CTTAAGCGCGCAGCCATCTCTGCTATCTCAGCCGCAGCAGTAAAAGCAAAGAATCTTGCA 2699
Query 2673 AAGCAAGAAGAAGATCAAATCCGACAACTTTCTGGATCATTGATAGAGAAGCAGCAGTTA 2732
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 2700 AAGCAAGAAGAAGATCAAATCCGACAACTTTCGGGATCATTGATAGAGAAGCAGCAGCTA 2759
Query 2733 CATAAGCTAGAAGCAAAGCTATCTATCTTCAATGAAGCTGAAAGCTTGACAATGAGGGTA 2792
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2760 CATAAACTAGAAGCAAAGCTATCTATCTTCAATGAAGCTGAAAGCTTGACAATGAGGGTA 2819
Query 2793 AGAGAGCAATTGGAAAGGTCAAGGCAACGGCTATATCATGAAAGGGCTCAGATCATAGCA 2852
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2820 AGAGAGCAATTAGAAAGGTCAAGGCAACGGCTATATCATGAAAGGGCTCAGATCATAGCA 2879
Query 2853 GCTCGACTAGGTGTCCCCCCTTCAATGTCCTCAAAAGCATCGTTACCAACAAACAGAATC 2912
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2880 GCTCGACTAGGTGTCCCACCTTCAATGTCCTCAAAAGCATCGTTACCAACAAACAGAATC 2939
Query 2913 GCTGCAAATTTTGCTAATGTAGCTCCAAGGCCTCCCATGGGCATGGCCTTTCCACGCCCA 2972
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 2940 GCTGCAAATTTTGCTAATGTAGCTCAAAGGCCTCCAATGGGCATGGCCTTTCCACGCCCA 2999
Query 2973 CCAATGCCAAGGCCTCCAGGTTTCTCTGTTCCTGGTTCTTATGTAGCTGCTACAACAATG 3032
|||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 3000 CCAATGCCAAGGCCCCCAGGTTTCCCTGTTCCTGGTTCTTTTGTAGCTGCTACAACAATG 3059
Query 3033 ACCGGAAGCTCAGATCCATCTCCAGGTTCAGACAATGTGTCTTCGGTTTAGTAGTCCCAC 3092
|||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 3060 ACCGGAAGTTCAGATCCATCTCCAGGTTCAGACAATGTTTCTTCGGTTTAGTGGTCCCAC 3119
Query 3093 ATTATAGTGTTCAGATTTGCGCGGGTAGCTCTTCTTGATGTTCT--ATTTATAAGCCAAG 3150
||||||||||| |||||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct 3120 ATTATAGTGTTAAGATTTGCA-GGGTAGCTCTTCGTGATGTTCTCTATTTATAAGCCAAG 3178
Query 3151 GTACAACATTATCCCACCTTTTGCGGCTTCAACCTT-GAGCTTG------------A--- 3194
||||| |||||||||||||||||||||||||||| ||||||| |
Sbjct 3179 GTACA---TTATCCCACCTTTTGCGGCTTCAACCTTTGAGCTTGGTTTCTTTTCTGAAGA 3235
Query 3195 TTTATCGGAATTATGTAGGAGACGGTGATATGGGGAAGTTAGTTAGGGGTTTTAGACCCA 3254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3236 TTTATCGGAATTATGTAGGAGACGGTGATATGGGGAAGTTAGTTAGGGGTTTTAGACCCA 3295
Query 3255 TCGATTAATGTTTAATGTAACTGTCAAATGAAACTTTTGGAGATCTGTGAATGTGTTTT- 3313
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3296 TCGATTAATGTTTAATGTAACTGTCAAATGAAACTTTCGGAGATCTGTGAATGTGTTTTT 3355
Query 3314 ATGGTTCTTTGAACTTTAATGAATTGTAACGTTGAACAGAGAGATATATGATTCCGCAAA 3373
|||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 3356 ATGGTTCTTTCAACTTTAATGAATTGTAACGTTGA-C-GAGAGATATATGATTCCGCAAA 3413
Query 3374 AGGTGGGAATGTCTT 3388
|||||||||||||||
Sbjct 3414 AGGTGGGAATGTCTT 3428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 168711429309
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5