BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491224
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34412.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Kinase bi... 948 0.0
> AT4G34412.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Kinase
binding protein CGI-121 (InterPro:IPR013926); Has 275 Blast
hits to 275 proteins in 139 species: Archae - 0; Bacteria -
5; Metazoa - 98; Fungi - 109; Plants - 42; Viruses - 0; Other
Eukaryotes - 21 (source: NCBI BLink). | chr4:16452960-16454633
REVERSE LENGTH=776
Length=776
Score = 948 bits (513), Expect = 0.0
Identities = 615/662 (93%), Gaps = 16/662 (2%)
Strand=Plus/Plus
Query 1 TCTTTGATTAGTCCTCTTCTGACTTCGCCGAATCTGTGTCGATCTCCGGC---G----AA 53
||||||| ||||| ||||||||||||||||||| |||||||||||||||| | ||
Sbjct 8 TCTTTGACTAGTCTTCTTCTGACTTCGCCGAATGTGTGTCGATCTCCGGCGAAGTAATAA 67
Query 54 ---GTAATAACCCT-AAAATCGTCCCCTCTTTTTCGCCGCCGACTTAAGCTATGAAGGAT 109
||||||||||| |||||| | |||||||||||||||||| || |||||||||||| |
Sbjct 68 GTCGTAATAACCCTAAAAATCTTGCCCTCTTTTTCGCCGCCGGCTAAAGCTATGAAGGTT 127
Query 110 TTTCATCTTGACCGTGGAAACACTCTCTCTGTCTCCCTCTTCTCCGATGTCACCAACTCC 169
||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 128 TTTAATCTTGACCGTGGAAACACTCTCTCTGTTTCCCTCTTCTCCGGTGTCACCAACTCC 187
Query 170 AAGGAGCTCTTGAATTCAATGCTTGATGGAAGTCTGAAGCTTGAGGTCTCATTTCTCAAT 229
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 188 AAGGAGCTCTTGAATTCAATGCTTGACGGAAGTCTGAAGCTGGAGGTCTCATTTCTCAAT 247
Query 230 GCATCACTTATTCCAGACATTTTTCCTCTCTTGGCTGCTGCTCAGAAAGCACTTATCTCC 289
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 248 GCATCACTTATTCCAGACATTTTTCCTCTATTGGCTGCTGCTCAGAAAGCACTTATCTCC 307
Query 290 AAATCACGCGATTCCTTATCAACCAGAACTCTTCATTCTGAGCTCGTTTACAATTACTCG 349
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 308 AAATCACGCGATTCCTTATCAACCAGAACTCTTCATTCTGAGCTTGTCTACAATTACTCA 367
Query 350 GGATCTAAGCATATTACAGAATCATTGAAACGATGTGGGATTTCTGA-AAGCACTACTTA 408
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 368 GGATCTAAGCACATTACAGAATCATTGAAACGATGTGGGATTTCTGAGAA-CACTACTTA 426
Query 409 CATTCTAGCTGCCCGGTTCAATGCTTCTCCCGTTGAGATGGAGGAGGTGGCGAAATTGAT 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 CATTCTAGCTGCCCGGTTCAATGCTTCTCCCGTTGAGATGGAGGAGGTGGCGAAATTGAT 486
Query 469 CCACGGGAAGGAAATTGATTTGGAGGAATTAAAGACGCATGCAAATCAAGCCAATATACT 528
| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 487 CAACGGGAAGGAGATTGATTTGGAGGAATTGAAGACACATGCAAATCAAGCCAATATACT 546
Query 529 AAAGCATTACAAGATAACTAGCCAAGAACTAGGAATTTCCTCTCTTGGAGATGCGATTGT 588
||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||
Sbjct 547 AAAGCATTACAAGATAACTAGCCAAGAGCTCGGAATTTCCTCTCTGGGAGATGCCATTGT 606
Query 589 TTGTCGGATAGCTGCACGCGACGCTTTGTAAGAGGAGA--TCTTTTCTTTATTTCTTATT 646
|||||| |||||||||||||| |||||||| ||| ||| |||||||||||| |||| ||
Sbjct 607 TTGTCGAATAGCTGCACGCGATGCTTTGTAGGAGTAGACATCTTTTCTTTATGTCTT-TT 665
Query 647 GT 648
||
Sbjct 666 GT 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34259688254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5