BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491227
Length=3066
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34390.1 | Symbols: XLG2 | extra-large GTP-binding protein 2... 3943 0.0
> AT4G34390.1 | Symbols: XLG2 | extra-large GTP-binding protein
2 | chr4:16441179-16445005 FORWARD LENGTH=3151
Length=3151
Score = 3943 bits (2135), Expect = 0.0
Identities = 2555/2750 (93%), Gaps = 60/2750 (2%)
Strand=Plus/Plus
Query 336 GATGGCTGCAGTTTTAAGAAAGTTTTTACCTTTACCATCACCGAATCCTAAAAGAGATAA 395
||||||||||||| |||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 400 GATGGCTGCAGTTATAAGAAAGTTATTACCTTTCCCATCACCGAATCCTAAAAGGGATAA 459
Query 396 TCGGGAAAGTGACGATGATGGTG-ATGAA--A------ATAGAATTGAATATTCATTCGC 446
||| |||||||||||||||| || | || | || |||| ||||||||||||||
Sbjct 460 TCGAGAAAGTGACGATGATGATGAAACAAGTAGTGGCTATCGAATCGAATATTCATTCGC 519
Query 447 CTCG-GAGTATAAAGGCCCTCTTATTGCTAATGTGCCACGAGCTCTTCCCGTTGACGTTG 505
| | ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 520 C-AGTGAGTATAAAGGTCCTCTTATTGCTAATGTGCCACGAGCTCTTCCCGTTGAAGTTG 578
Query 506 ATCAGATTCCTACTGCTCTTCCCGTTTCATTTTCTTCCTTGTC-GCGTGATGGCTCTTAC 564
||||||||||||| |||||||||||||| |||||||||||| | | ||| | |||||||
Sbjct 579 ATCAGATTCCTACGGCTCTTCCCGTTTCCTTTTCTTCCTTG-CGGAGTGGTATCTCTTAC 637
Query 565 CCAGTGGTTCCACCTCTCGTTAGGA--GA-GTTACCAAGAAATCACCTGAATCTGGAATA 621
||||||| |||||||||||| || | | |||||||| | ||||||| |||||||||
Sbjct 638 CCAGTGG---CACCTCTCGTTATGACTAAGGATACCAAGAGACCACCTGATTCTGGAATA 694
Query 622 GAGAAGAAAAACGGTTTGGTTGACTCTGCAGCTGGTTCTAGTGTGGTTTTGAAAGGGCGT 681
|||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 695 GAGAAGAAGAACGGTTTCGTTGACTCTGCAGCTGGTTCTAGTGTGGTTTTGATAGGGCGT 754
Query 682 GATGTTGTTTCTGGCtcatcatcatcatcatcatcatcaAAGAGGTTGGATGTATCAGAA 741
|||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||
Sbjct 755 GATGTTGTTTCTGG--C-TCATCATCATCATCATCATCAAAGAGGTTGGATGTACCAGAA 811
Query 742 GCAGTGAAAAATTCGGTTGATTTACAGTTATCACCATCATCACCATTGTCTGCAGCAGTG 801
| |||||||| | | | |||||| | |||||||||||||||||||||||||||| ||| |
Sbjct 812 GAAGTGAAAAGTCCTGCTGATTTTCGGTTATCACCATCATCACCATTGTCTGCATCAGCG 871
Query 802 AGAGAGGAGGATACA-TTAGATGATGGA-AGAGTTTCGGATGTGGGAACTAGAGCTGTGA 859
|||||||||||| || ||||||||| || |||||||||||||||||| ||||||| ||||
Sbjct 872 AGAGAGGAGGAT-CACTTAGATGAT-GACAGAGTTTCGGATGTGGGACCTAGAGCAGTGA 929
Query 860 GATTCGTTGAACCTTTTCAGAGTAGTGAATGTGATGAAAGCTCTTACACTTCTGATGGAG 919
||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 930 GATTCGTTGAACCTTTTCAGAGTAGTGAATGTGATGAGAGCTCCTATGTTTCTGATGGAG 989
Query 920 AAAGTATAGCTCCAACGCCTAAAG-TGGAAAGGAAAGGGAAAAGAGGATCGTGTTACCGA 978
||||||||||| |||||| || || | ||||||||||| ||||||||||||||||||||
Sbjct 990 AAAGTATAGCTGCAACGCATAGAGCT-GAAAGGAAAGGTAAAAGAGGATCGTGTTACCGG 1048
Query 979 TGCCTGCTGGGGAACCGGTTTACTGAGAAGGAAGTCTGTATTGTCTGCGATGCCAAGTAC 1038
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1049 TGCCAGTTGGGGAACCGGTTTACTGAGAAGGAAGTCTGTATTGTCTGCGATGCCAAATAC 1108
Query 1039 TGTTTCAACTGTGTGCGCAGAGCCATGGGTGCGATGCCCGAAGGAAGAAAGTGTCAAACT 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1109 TGTTTCAACTGTGTGCGCAGAGCCATGGGTGCGATGCCCGAAGGAAGAAAGTGTCAAGCT 1168
Query 1099 TGCATTGGTTTTGGGATCGATGAGTCGAAGAGAGCAAGTCTTGGAAAGTGTTCAAGAATG 1158
|||||||||| | |||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1169 TGCATTGGTTATAGGATTGATGAGTCCAAGAGAGCAAGTCTCGGAAAGTGTTCAAGAATG 1228
Query 1159 CTGAAGCGCCATCTCACAGATTCTGAACTTCGACAAGTCATGAATGCCGAGATCACCTGC 1218
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 CTCAAGCGCCATCTCACGGATTCTGAACTTCGACAAGTCATGAATGCCGAGATCACCTGC 1288
Query 1219 AAGGTGAATCAATTGCCCTCACGGCTTATCACTGTCAATGAAC-AGCCTTTAAGTGAAGA 1277
|||| |||||||||||| ||||| ||||||| |||||||| || ||||||||||||||||
Sbjct 1289 AAGGCGAATCAATTGCCTTCACGACTTATCATTGTCAATG-ACAAGCCTTTAAGTGAAGA 1347
Query 1278 TGAGCTTTTCACGTTGCGGACATGTCCAAATCCACCCAAGAACCTAAAACCTGGAAACTA 1337
|||||||| |||||||| |||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 1348 TGAGCTTTACACGTTGCAGACATGTCCAAATCCACCCAAGAAGCTAAAACCCGGACACTA 1407
Query 1338 TTGGTATGATAAGGTTTCTGGCTACTGGGGAAAGATAGGCGAGAAACCTTGTCAGATTAT 1397
|||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1408 TTGGTATGATAAGGTTGCTGGCTACTGGGGAAAGATAGGAGAGAAACCTAGTCAGATTAT 1467
Query 1398 AAGTCCTAACAACAGCATAGGAGGTA-ACATCAGTGAGAACGTAAGCAATGGAGACACTG 1456
|||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||
Sbjct 1468 AAGTCCTAACAACAGCATAGGAGG-ATACATCAGTGAGAAAGTAAGCAATGGAGACACTG 1526
Query 1457 AAATTTATATTAATGGCCGGGAAATAACCAAGCAAGAGCTCATGATGCTCAAGTGGGTGG 1516
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 1527 AAATTTATATTAATGGCCGGGAAATAACCAAGCCAGAGCTCACGATGCTCAAGTGGGCGG 1586
Query 1517 GGGTGCAATGTGAAGGAAAACCTCATTTTTGGGTTGATTCAGATGGTACTTACCGAGAAG 1576
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1587 GGGTGCAATGTGAAGGAAAACCTCATTTTTGGGTCGATTCAGATGGTTCTTACCGAGAAG 1646
Query 1577 AAGGTCAAAAGCATCCCATCGGGAACATCTGGAATAAGAAGAGAACAAAAATCGCTTGTG 1636
||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| |
Sbjct 1647 AAGGTCAAAAGCATCCCATCGGGAACATCTGGAGTAAGAAGAGAGCAAAAATTGCTTGCG 1706
Query 1637 TTGTGTTCTCTCTGCCAGTTCCTCCGGCTTCTTCTGCAGTAGAACCATGTGATGTGCCCT 1696
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1707 CTGTGTTCTCTCTGCCAGTTCCTCCGGCTTCGTCTGCAGTAGAACCATATGATGTGCCCT 1766
Query 1697 TATATGAGCATAAAATGCTTAACAAGCTTCTTTTGATTGGTAATGAAAAAGGTGGCGCCA 1756
|||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1767 TATATGAGCAGAAGATGCTTAACAAGCTTCTTTTGATTGGTAGCGAAAAAGGTGGCGCCA 1826
Query 1757 CTACAATTTACAAACAAGCAAGGTCTCTCTACAACGTCTCCTTCTCTGTAGACGACCGTG 1816
|||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 1827 CTACAATTTACAAACAAGCAAGGTCTCTCTACAACGTCTCATTCTCTTTAGAAGACCGTG 1886
Query 1817 AAAAAATCAAATTCATTATCCAAACAAATCTCTATACCTATCTGGCAATGGTTCTTGAGG 1876
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1887 AAAGAATCAAATTCATAATCCAAACAAATCTCTATACCTATCTGGCAATGGTTCTTGAGG 1946
Query 1877 CACATGAAAGATTTGAAAAAGAGATGAGCAATGACCAGTCTTCAGGTAATGTGGGAGATG 1936
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1947 CACATGAAAGATTTGAAAAAGAGATGAGCAATGACCAGTCTTCAGGCAATGTGGGAGATG 2006
Query 1937 AAACCAGTGCTAAAA-CTGTTAACTCGATCAACCCGAGACTAAAACATTTTTCAGATTGG 1995
|||||||||| |||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 2007 AAACCAGTGC-AAAACCAGGTAACTCGATCAACCCGAGACTAAAACATTTTTCAGATTGG 2065
Query 1996 CTTCTGAAAGAAAAGGAAGACGGAAACCTGAAGATATTTCCACCATCAAGCCGTGAGAAT 2055
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2066 GTTTTGAAAGAAAAGGAAGACGGAAACCTGAAGATATTTCCACCATCAAGCCGTGAGAAT 2125
Query 2056 GCACAAACTGTTGCAGATCTCTGGAGAGTACCGGCTATTCAAGCCACCTACAAAAGACTT 2115
|| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2126 GCTCAAACCGTTGCAGATCTCTGGAGAGTACCAGCTATTCAAGCCACCTACAAAAGACTT 2185
Query 2116 CGCGATAGACTTCCCAGAAACGCCGTTTATTTTCTTGAACGAATTCTTGAGGTCTCGAGA 2175
||||||| ||||||||| ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2186 CGCGATACACTTCCCAGGAACGCCGTTTATTTTCTTGAAAGAATTCTTGAGATCTCGAGA 2245
Query 2176 TCAGAATACGATCCTTCTGATATGGACATATTGCAAGCGGAAGGACTCTCCTCTATGGAA 2235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2246 TCAGAATACGATCCTTCTGATATGGACATATTGCAAGCGGAAGGACTCTCCTCTATGGAA 2305
Query 2236 GGACTTTCTTGTGTGGACTTCTCATTCCCATCAACTTCTCAAGAAGAGACTCTTGAGAGC 2295
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2306 GGACTTTCTTGTGTGGACTTCTCATTCCCATCAACTTCTCAAGAAGAGTCTCTTGAGAGC 2365
Query 2296 GATTATCAACACGATCCAGACATGAAGTACCAACTCATCCGGCTAAATCCGAGAAGCCTT 2355
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2366 GATTATCAACATGATACAGACATGAAGTACCAACTCATCCGGCTAAATCCGAGAAGCCTT 2425
Query 2356 GGTGAAAACTGGAAATTGCTGGAAATGTTTGAAGACGCTGACTTGGTGATATTTTGTGTC 2415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2426 GGTGAAAACTGGAAATTGCTGGAAATGTTTGAAGACGCTGACTTGGTGATATTTTGTGTC 2485
Query 2416 TCATTAACAGATTATGGAGAATACATAGAAGACGGTGATGGGAATCTTGTGAACAAGATG 2475
||| ||||||| |||| |||| |||||||||||||||| |||||| ||||||||||||||
Sbjct 2486 TCACTAACAGACTATGCAGAAAACATAGAAGACGGTGAGGGGAATATTGTGAACAAGATG 2545
Query 2476 CTTGCAAACAGACAGCTTTTCGAGAACATGGTGACTCACCCGAGCCTAGCTAACAAAAGG 2535
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2546 CTTGCAACCAAACAGCTTTTCGAGAACATGGTGACTCACCCGAGCCTAGCTAACAAAAGG 2605
Query 2536 TTCCTTTTGGTTCTAACAAAATTTGATCTCCTAGAAGAAAAGATCGAAGAGGTACCTCTA 2595
|| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2606 TTTCTTTTGGTTCTAACCAAATTTGATCTCCTAGAAGAAAAGATCGAAGAGGTTCCTCTA 2665
Query 2596 AGAACCTGTGAGTGGTTCGAAGACTTCAACCCATTGATCAGCCAGAACCAGACGAGCAGA 2655
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2666 AGAACCTGTGAGTGGTTTGAAGACTTCAACCCATTGATCAGCCAGAACCAGACGAGCAGA 2725
Query 2656 CACAACCCTCCAATGGCTCAGCGTGCTTTCCATTACATTGGTTATAAGTTCAAGAGACTC 2715
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2726 CACAACCCTCCAATGGCTCAGCGTGCTTTCCATTACATTGGATATAAGTTCAAGAGACTC 2785
Query 2716 TATGACTCAATCTTGGAACCAGTAAATATGCGTGGAAGGAGCTTTAGGCCAAAATTGTTT 2775
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 2786 TATGACTCAATCTTGGAACCCGTAAATATGCGTGGAAGGAGCTTTAAGCCAAAATTGTTT 2845
Query 2776 GTTTGTCAAGTGAGCTTGGAGAGTGATACTGTGGACAATGCAATGAGGTATGCGAGAGAG 2835
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2846 GTTTGTCAAGTGAGCTTGGAGAGTGATACTGTGGACAATGCACTGAGGTATGCGAGAGAG 2905
Query 2836 ATTCTCAAGTGGCATGTTGAAGAAACTTCCATGTTCCAAGAGATGTCTACTACTAGCATC 2895
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2906 ATTCTCAAGTGGCATGTTGAAGAAACTTCCATGTTCCAAGAGATGTCTACTACTAGCATA 2965
Query 2896 GAGGCCAGCTCGTCCTCTTGAt-tttttcctctaaaattctttctttctttctttctttG 2954
|||||||||||||||||||||| ||||| | |||||||||||||||||||| |
Sbjct 2966 GAGGCCAGCTCGTCCTCTTGATATTTTTTC-CTAAAATTCTTTCTTTCTTT--------G 3016
Query 2955 TGGAAATTACATA-GTTTGT--CTGT----GTGTGTATGTATGT---AT--GTAGT-GCC 3001
||||||||||||| |||||| || | |||||||||| ||| || ||||| |
Sbjct 3017 TGGAAATTACATAAGTTTGTTTCTCTCTCTGTGTGTATGTTTGTTGTATATGTAGTAGTG 3076
Query 3002 --AAGATACATTCATGTGATTGATTTTTCAGGaaaaaaaaaaaaaGAGAA 3049
|||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 3077 TGAAGATACATTCATGTGATTGATTTTTCAGGGGAAAAAAAATA-GAGAA 3125
Score = 322 bits (174), Expect = 1e-86
Identities = 243/275 (88%), Gaps = 9/275 (3%)
Strand=Plus/Plus
Query 1 GTCAAGTCTTCGTCTTTTACTAGTGAGAGA-GAAGACGATCCAACCATCTGTCTTTCTTC 59
|||||||| |||||||||||||||| | | | | | | ||| | |||||||||||||
Sbjct 4 GTCAAGTCCTCGTCTTTTACTAGTG-TATACG-ATCCAACCCATCTTTCTGTCTTTCTTC 61
Query 60 TTTTTGTTTACTTCTTCTACATATTCCC-TTTCCCGGAAAATTTATTTGCTGATTTTTCT 118
|||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||
Sbjct 62 TTTTTGTTTACTTCTTCTGCAAATTCCCTTTTCCCGGAAAATTTATTTGCTGATTTTTCT 121
Query 119 TCCTTCCATCACCACTTTCCTG-aaaaaaaaaTTCGACTTTCGTCTCTTTCTTTAAGCTA 177
|||||||||| ||||||||||| ||||||||| | | ||||||||||||||||||||||
Sbjct 122 TCCTTCCATCGCCACTTTCCTGGAAAAAAAAACTAAA-TTTCGTCTCTTTCTTTAAGCTA 180
Query 178 AAGAAGCTTTATGTGATCAATTTTT-CTATATTTCTGGAGTTGGGTTCTTGTTTCACGCT 236
||| |||||| |||||||||||||| ||||||||||| ||||| |||||| ||||||||
Sbjct 181 AAGGAGCTTTCTGTGATCAATTTTTTCTATATTTCTGTAGTTGCGTTCTTATTTCACGC- 239
Query 237 GTTTT-TGATTTGATTATATAAGCCACTAATGGCT 270
| ||| |||||||||||| ||||||||||||||||
Sbjct 240 GCTTTGTGATTTGATTATTTAAGCCACTAATGGCT 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 152457339777
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5