BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491230
Length=899
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34360.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1456 0.0
> AT4G34360.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr4:16431941-16433958
FORWARD LENGTH=1023
Length=1023
Score = 1456 bits (788), Expect = 0.0
Identities = 866/903 (96%), Gaps = 7/903 (1%)
Strand=Plus/Plus
Query 2 AAAGGGGTTTAGGGTTTA-TGCCTGAGCTGAT-A--AGGAGAATCAAACCAAGTACAGCT 57
|||||||||||||||||| || |||||||||| | ||||||||| | ||||| |||||
Sbjct 12 AAAGGGGTTTAGGGTTTATTGGCTGAGCTGATAAGGAGGAGAATC-GAGCAAGTCCAGCT 70
Query 58 ATGGAGAATCCAAATTCCGTTGGTCCTCCTTCTGCTCTGACCTACCTCGATCCTCACTAC 117
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 71 ATGGAGAATCCAAATTCCGTTGGTCCTCCTTCTGCTTTAACCTACCTCGATCCTCACTAC 130
Query 118 TGGGACGAGAGGTTTTCTTCTGAAGAACACTATGAATGGTTCAAGGATTACTCTCATTTC 177
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 TGGGACGAGAGATTCTCTTCTGAAGAACACTATGAATGGTTCAAGGATTACTCTCATTTC 190
Query 178 CAGCATCTCATCAAATCCAACATCAAAACCTCTTCTTCCGTCTTGGAATTGGGATGTGGG 237
||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 191 CAGCATCTCATCATATCCAACATCAAACCCTCTTCTTCCGTATTGGAATTGGGATGTGGG 250
Query 238 AATTCTCAGTTGTGTGAAGAGTTGTATAAAGATGGGATTGTTGATATTACCTGCATTGAT 297
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 251 AACTCTCAGTTGTGTGAAGAGTTGTATAAGGATGGGATTGTTGATATTACCTGCATTGAT 310
Query 298 TTATCTTCGGTTGCGGTAGAGAAGATGCAGAGTCGGTTGCTATCAAAAGGGTACAAAGAA 357
|||||||| || |||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 311 TTATCTTCCGTGGCGGTAGAGAAGATGCAGAGTCGGCTGCTACCAAAAGGGTACAAAGAA 370
Query 358 ATAAAAGTGGTGCAAGCTGACATGCTAGACCTCCCATTTGACAGCGAGTCTTTTGATGTC 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ATAAAAGTGGTGCAAGCTGACATGCTAGACCTCCCATTTGACAGCGAGTCTTTTGATGTG 430
Query 418 GTTATTGAGAAAGGGACCATGGATGTACTATTTGTGGATGCTGGTGATCCTTGGAATCCC 477
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 431 GTTATTGAGAAAGGGACCATGGATGTACTGTTTGTGGATGCTGGTGATCCTTGGAATCCC 490
Query 478 CGTCCAGAAACTGTTAGCAAAGTCGTGGCAACCCTTGATGGAGTTCACCGGGTTTTGAAA 537
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 491 CGTCCAGAAACTGTTAGCAAAGTCATGGCAACCCTTGATGGAGTTCACCGGGTTTTGAAA 550
Query 538 CCAGATGGCATTTTCATTTCCATTACTTTTGGCCAGCCGCATTTCAGGCGTCCTTTGTTT 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 551 CCAGATGGCATTTTCATTTCCATTACTTTTGGCCAGCCGCATTTCAGGCGTCCTCTGTTT 610
Query 598 AATGATCCTAAGTTTACTTGGTCCATGGAGTACAACACTTTTGGCGATGGCTTCCATTAT 657
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 AAGGATCCTAAGTTTACTTGGTCCATGGAGTACAACACTTTTGGCGATGGCTTCCATTAT 670
Query 658 TTCTTCTATATCTTAAGAAAGGGAAAGAGATCTAATGAAGAGAACGAAGATGAGAAATGC 717
||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||
Sbjct 671 TTCTTCTATATCTTAAGAAAGGGAAAGAGATGTAATGATGAGAAAGAAGATGAGAAATGT 730
Query 718 AGTGATCCATCAATATCCCTATATCAAGATGAACTTGAAGGCGAAGACTACCTCTTCCGA 777
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 AATGATCCATCAATATCCCTATATCAAGATGAACTTGAAGGCGAAGACTACCTCTTCCGA 790
Query 778 ACACGCATTGATGATGACGAGGATTAGGACAAGAACAACGTGAGATTAGTTGTTGTTGCT 837
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 ACACGCATTGATGATGGCGAGGATTAGGACAAGAACAACGTGAGATTAGTTGTTGTTGCT 850
Query 838 ATGTAATGTTGATTTG-TAATTTTAGAATCATTCTTTGTGGGTTTTGGACAAAAGTAAAG 896
||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 851 CTGTAATGTTGATT-GCTAATTTTAGAATCATTCTTTGTGGATTTTGGACAAAAGTAAAG 909
Query 897 GAT 899
|||
Sbjct 910 GAT 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43904644478
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5