BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491232
Length=1342
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34340.1 | Symbols: TAF8 | TBP-associated factor 8 | chr4:16... 1980 0.0
> AT4G34340.1 | Symbols: TAF8 | TBP-associated factor 8 | chr4:16426639-16428010
REVERSE LENGTH=1372
Length=1372
Score = 1980 bits (1072), Expect = 0.0
Identities = 1261/1350 (93%), Gaps = 22/1350 (2%)
Strand=Plus/Plus
Query 2 TTTCCCGGTGCTTCGTCGTCGTTAGGTCTTTTCCGTTGACGGAGGCAAATTTCTTCGCTT 61
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 32 TTTCCCGGTGCTTCGTCGACGTTAGGTCTTTTCCGTTGACGGAGGCAAATTTCTTCGATT 91
Query 62 CTCTTTGTACCGGCGGTAAATGTGGTCTTACCGACGAGAAAACCCTAATTTCAGGGATTA 121
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 92 CTCTTTAAACCGGCGGTCCATGTGGTCTTACCGACGAGAAAACCCTAATTTCAGGGATTA 151
Query 122 GATAGATTTTTGTAACATATTCGAGCGATGAGCACAGAGAGAGCTCAAGATGGTGATAGG 181
||||| |||||| |||| ||| |||| |||| |||||||||||||||||| |||||||||
Sbjct 152 GATAGCTTTTTGAAACAAATTAGAGCAATGAACACAGAGAGAGCTCAAGAAGGTGATAGG 211
Query 182 AACGAGGCCGCTTCGTCCTC-GAGATGTTCCGAGTCCTACGAGTTTAGCCACGCCGCCGC 240
||||| ||||| || ||||| | | || |||||||||||||||||||||||||| |||||
Sbjct 212 AACGATGCCGCATCTTCCTCTG-GCTGCTCCGAGTCCTACGAGTTTAGCCACGCAGCCGC 270
Query 241 TAAAGCTGCAGTGGCTCAGGTCTGCGAGAGCGTCGGGTACGAGCATTTCAAGGATCCAGC 300
|||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 271 TAAAGCTGCAGTAGCTCAGGTCTGCGAGAGCGTTGGGTACGAGAATTTCAAGGATCCAGC 330
Query 301 TCTCGAATCTCTAGCTGGATTCGCACTCCAGTACATTCTTCAGCTAGGTAAAACCGCTAC 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 TCTCGAATCTCTATCTGGATTCGCACTCCAGTACATTCTTCAGCTAGGTAAAACCGCTAC 390
Query 361 TTCCTTCGCTAATCTAACTGGTAGGAGTCAGTGTAACGCGTTCGATATCATTCTGGCTTT 420
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 391 TTCCTTCGCTAATCTAACTGGTAGGAGTCAGTGTAACGTGTTCGATATCATTCTCGCTTT 450
Query 421 GGATGATATGACTGA---CAATGGCGAAGAAGGAATTTCTTCTGAGAGTTGTTCATTAGG 477
||||||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||
Sbjct 451 GGATGATTTGACTGATAACAATGGCGAACAAGGAATTTCGTCTGAGAGTTGTTCATTAGG 510
Query 478 GCGTTCGGTTAAACTTAGGGAGATTATCGATTACGTTAATTCGAGTGAAGAAATCCCGTT 537
|||||| |||||||||||||||||||||||| ||||||||||||||||||| |||| ||
Sbjct 511 TCGTTCGATTAAACTTAGGGAGATTATCGATTTCGTTAATTCGAGTGAAGAAGTCCC-TT 569
Query 538 T-TCGCAGCCATTGCCGCGTTTTCCTGTAGCTATAAGTGATAAAAGTAGGAATTTGATCC 596
| |||||||||||||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct 570 TCTCGCAGCCATTGCCAAGTTTTCCTGTAGCTATAAGTGATAGGAGTAGGAAGATGATCC 629
Query 597 CAAGCTTTGTTGAAATTGGTGAAACTCCACCAGGAAAACATATTCCTTTGTGGCTACCAG 656
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 630 CAAGCTTTGTTGAAATTGGTGAAACTCCACCTGGGAAACATATTCCTTTGTGGCTACCAG 689
Query 657 CTTTCCCTGATCCTCATACTTATAAGGAAACACCTATGTGGATCGAAAGGGTATCAGATC 716
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 690 CTTTTCCTGATCCTCATACTTATAAGGAAACCCCTATGTGGATCGAAAGAGTATCAGATC 749
Query 717 CGAGGGGGGATAAGATTGAACAAGCGAGGCAGAGGCGGAAGGCTGAGAGAGCTTTGTTGA 776
| ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 750 CAAGGGGAGATAAGATTGAACAAGCGAGGCAGAGACGAAAGGCTGAGAGAGCTTTGTTGA 809
Query 777 GTTTGCAGAGGAAACTTGTTTGTAAACTCTCCTCAAGGAATCCTGTGTGGGGAGATTTGG 836
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 810 GTTTGCAGAGGAAACTTGTTTGTAAAATCTCCTCAAGGAATCCTGTGTGGGGAGATATGG 869
Query 837 ATGGTGTGAAAGAAGAAATGAGAGAAGACGAGAGTGA-CTTGCGTTCTGTATCGCCTTCG 895
||||||||||||||||||||||||| || |||||||| || ||||||||||||| | ||
Sbjct 870 ATGGTGTGAAAGAAGAAATGAGAGATGATGAGAGTGAACT-GCGTTCTGTATCGTC--CG 926
Query 896 ATATCCGAGGAGAAAGTCGAATCATTGAATAGAGATGGTCT-ATCAGTGATAGAGGCATT 954
| |||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 927 ------G-GGAGAAAGTCGAATCATTGAATAGAGATGG-CTTATCAGTGATAGAGGCATT 978
Query 955 TGCTCCTGCCATGGAGGCTGCAAGAGATGGGTTTTCTAGTGAAGCTCACACTGAATGGAA 1014
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 TGCTCCTGCTATGGAGGCTGCAAGAGATGGGTTTTCTAGTGAAGCTCACACTGAATGGAA 1038
Query 1015 GAAGAAAAAACCTGTTGCTCTTTCTATGCTCAGAACTGAGAAGAAATTTCTCGGACAACC 1074
|||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1039 GAAGAATAAACCTGTTGCTCTTTCTAAGCTCAGAACCGAGAAGAAATTTCTCGGACAACC 1098
Query 1075 GTTGGATCTAAGGCTACAGATGAAGGGTGAAGATAGACCCTTATCCTTTGTGCGTGAGGA 1134
||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1099 TTTGGATCTAAGTCTACAGATGAAGGGTGAAGATAGACCCATATCCTTTGTGCGTGAGGA 1158
Query 1135 GGATAGAGATGACAAAAGAAGGAGAGCGGAGTTCATTTTGAGACAGTGTATGGAGAACCC 1194
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1159 GGATAGAGATGACAAAAGAAGAAGAGCGGAGTTCATTTTGAGACAGTGTATGGAGAACCC 1218
Query 1195 AGTAGACCTCAATCAGTTGTAAAATAAGTGATTCATTACAGTTTGTGAAGCGTAGTTTTA 1254
|||||||||||||||||||||||||||||||||||||||||| |||| |||||| | |||
Sbjct 1219 AGTAGACCTCAATCAGTTGTAAAATAAGTGATTCATTACAGTCTGTGTAGCGTACTATTA 1278
Query 1255 AAATTGTGATTTGTAACTTTTCTTTA--CAGGCCTATGTTATGATTATGATTTTGTGACT 1312
| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1279 ATCTTGTGATTTGTAACCTTTCTTTATACAGGCCTATGTTATGATTATGATTTTGTGACT 1338
Query 1313 GAAAGAATGAGAATTTCTAACCTATCTTTT 1342
||||||||||||||||||||||||||||||
Sbjct 1339 GAAAGAATGAGAATTTCTAACCTATCTTTT 1368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66063917220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5