BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491233
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34320.1 | Symbols: | Protein of unknown function (DUF677) ... 2248 0.0
> AT4G34320.1 | Symbols: | Protein of unknown function (DUF677)
| chr4:16422166-16423948 FORWARD LENGTH=1519
Length=1519
Score = 2248 bits (1217), Expect = 0.0
Identities = 1336/1393 (96%), Gaps = 9/1393 (1%)
Strand=Plus/Plus
Query 1 TGTAGTTTTTGTTGTCTCTCTCCTGATAAGCTCGACCAAGTTTATCTCTTTCTCGCTAAT 60
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20 TGTTGTTGTTGTTGTCTCTCTCCTGATAAGCTCGACCAAGTTTATCTCTTTCTCGCTAAT 79
Query 61 CATTTCTCTTTAAACTTCTCTCATAGTTGAACCATTTTGTTTTAATTAGTATAAAGATTC 120
|||||||||||||||||||||||| |||||||||||||||||| | || ||||||||||
Sbjct 80 CATTTCTCTTTAAACTTCTCTCATCGTTGAACCATTTTGTTTT-AGTA-CATAAAGATTC 137
Query 121 TTCTTCATTCATTCTCTTGTACACATTTCTATGTGAAAAACGCAGTTCTATCATAAAAGT 180
|||||||||| || | |||||| | ||||||||| | ||||||| |||||||||||||||
Sbjct 138 TTCTTCATTC-TT-T-TTGTACGCGTTTCTATGTTACAAACGCATTTCTATCATAAAAGT 194
Query 181 TATTATTACTTGAGCTCAATCTTCATTGGTTTATTCATATCTTCAGATCAATCGAATTCG 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 195 TATTATTACTTGAGCTCAATCTTCATTGGTTTATTCATATATTCAGATCAATCGAGTTCG 254
Query 241 GTAC-GACGACGTTCTAATGGGAAACCAAACAAGCAAAAAGTCACAAGAGACATCGGCTA 299
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GTACTG-CGACGTTCTAATGGGAAACCAAACAAGCAAAAAGTCACAAGAGACATCGGCTA 313
Query 300 AGAGCGTGCACTACACAACGGAGCTGAGATCGTACGAGGCCGCGTGCAAAGCAGACACGG 359
||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||
Sbjct 314 AGAGCGTGCACTACACAACGGAGCTGAGATCCTACGCGGCTGCGTGCAAAGCAGACACGG 373
Query 360 AGCTTCAGTCTTTCGACACGTGTTTGCAAGCACGGACAAGTCACGTGATAAGCACGCTAG 419
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 374 AGCTTCAATCTTTCGACACGTGTTTGCAAGCACGGACGAGTCACGTGATAAGCACGCTAG 433
Query 420 CTACGGGCGTTGAGGTTCGAGCGCTCTCGTTCGATTCCTTGAAAGAAGTGACGCAATGTT 479
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 434 CTACGGGGGTTGAGGTTCGAGCGCTCTCGTTCGATTCCTTGAAAGAAGTGACGCAATGCT 493
Query 480 TGTTGGAGATGAACCAAGAAGTGGTGAAAGTGATATTGGATTGCAAGAAGGATATTTGGA 539
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 494 TGTTGGAGATGAACCAAGAAGTGGTGAAAGTGATATTGGATTGCAAGAAAGACATTTGGA 553
Query 540 AGAATCAAGAAATGTTTGAGCTCGTCGAAGATTACTTTGAGAATAGCTTGAAGACACTTG 599
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 554 AGAATCAAGAAATGTTTGAGCTTGTCGAAGATTACTTTGAGAATAGCTTGAAGACACTTG 613
Query 600 ATTTCTGTGCTGCTTTGGAGAAAGGCTTGAGACGAGCTCGTGATAGTCATCTTTTGATTC 659
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 ATTTTTGTGCTGCTTTGGAGAAAGGCTTGAGACGAGCTCGTGATAGTCATCTTTTGATTC 673
Query 660 TTGTTGCTCTTCAGCAGTTTGAAGATGAGAGCCTTGTTCAAGGTGGGAATGGATACAAGA 719
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 674 TTGTTGCTCTTCAACAGTTTGAAGATGAGAGCCTTGTCCAAGGTGGGAACGGATACAAGA 733
Query 720 AGACACTTGAAGAGCTAAAGAATTTCAAAGACGCAGAGAGTCCATTT-AATGAAGACTTC 778
||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||
Sbjct 734 AGACACTTGAAGAGCTAAAGAATTTCAAAGACGCAGAGAGTCC-TTTCAACGAAGACTTC 792
Query 779 TTCAAAATGTTCCAATCTGTTTACAAACAGCAGATGCTGATGCTTGAGAAGCTTCAGCTT 838
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 793 TTCAAAATGTTCCAATCTGTTTACAAACAGCAGATGCTGATGCTCGAGAAGCTTCAGCAT 852
Query 839 CGTAAGAACAAGCTTGACAAGAAGCTTAAATGCATCCACACATGGAGGAAACTCTCCAGC 898
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 853 CGTAAAAACAAGCTTGACAAGAAGCTTAAATGCATCCACACATGGAGAAAACTCTCCAGC 912
Query 899 ATCATCTTTGTGGCTACCTTTGCCACTGTGCTCATCTGCTCTGTTGTGGCTGCTGCCATG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 913 ATCATCTTTGTGGCTACCTTTGCCACTGTGCTCATCTGCTCTGTTGTGGCTGCAGCCATG 972
Query 959 GCAGCTCCTCCTGTGGCTGCGGCTCTTGCTGCAGCTACAGCCGTGCCGCTAGGCTCAATG 1018
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 973 GCAGCTCCTCCTGTGGCTGCGGCTCTCGCTGCAGCTACAGCCGTGCCGCTAGGCTCAATG 1032
Query 1019 GGGAAATGGATTGACTCGCTGTGGAAGAATTATGAGAATGCACTCAAAGGGCAAAAAGAG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 GGGAAATGGATTGACTCGCTGTGGAAGAATTATGAGAATGCACTCAAAGGGCAAAAAGAG 1092
Query 1079 GTGATCAGTTCGATGCAAGCGGGAACATATGTCGCTGTTAAAGATTTGGATAATATCCGT 1138
||||||||||||||||| || ||||||| ||| || |||||||||||||||||||||||
Sbjct 1093 GTGATCAGTTCGATGCAGGCAGGAACATTTGTGGCGGTTAAAGATTTGGATAATATCCGA 1152
Query 1139 GTTTTGATCGAACGGTTGGAGATAGAGATCACGGGGATGGTGAAGAGTGCGGAGTTCGCG 1198
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1153 GTTTTGATCGAACGGTTGGAGATTGAGATCACGGGGATGGTGAAGAGTGCGGAGTTCGCT 1212
Query 1199 GTGGAGCATAACGCAGTCAAGATTGGGATTGATGATATAAAGAAGAAACTTGAGGTGTTT 1258
||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1213 GTGGAACATAACGCGGTCAAGATTGGGATCGATGATATAAAGAAGAAGCTTGAGGTGTTT 1272
Query 1259 AAGAAGAATGTTGAAGAATTGGGGACTCAAGCAGATTTGTGTAGCAGAGATATAAGAAGG 1318
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 AAGAAGAATGTTGAAGAACTGGGGACTCAAGCAGATTTGTGTAGCAGAGATATAAGAAGG 1332
Query 1319 GCAAGGACTGTGATTCTTCAGAGGATCATCAAGCATCCTAATAATGCTAGTAGCAGCACT 1378
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1333 GCAAGGACTGTGATTCTTCAGAGGATCATCAAGCACCCTAATAATGCTAGTAGTAGCACT 1392
Query 1379 TGAATAATGAAAT 1391
|||||||||||||
Sbjct 1393 TGAATAATGAAAT 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68523743925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5