BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491238
Length=653
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34290.1 | Symbols: | SWIB/MDM2 domain superfamily protein ... 953 0.0
> AT4G34290.1 | Symbols: | SWIB/MDM2 domain superfamily protein
| chr4:16410832-16412385 FORWARD LENGTH=749
Length=749
Score = 953 bits (516), Expect = 0.0
Identities = 584/616 (95%), Gaps = 7/616 (1%)
Strand=Plus/Plus
Query 19 CACTAACAATGGCTCTTTCTTCTGGAATCTTCTCTACGACCTTTCTCTGCGTCGATACGG 78
||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 45 CAC-AACAATGGCTCTTTCTTCTGGAATCTTCTCTACTACTTTTCTCTGCGTCGATACGG 103
Query 79 CGCCGTTCCGTAGCTCACTGTTGTCTCCCTCTTCGCTCCGTTTTTCCCCTCATCATCCGG 138
||||||| || |||||| |||||||||| |||||||||||||| |||||| ||||||||
Sbjct 104 CGCCGTTGCGCAGCTCAATGTTGTCTCCATCTTCGCTCCGTTTGTCCCCTAATCATCCGA 163
Query 139 CTAACCTGCGCATGGTTCGAGCTGTAACATCCGCGACGGCGGCTTCCTCCGACCCGACAA 198
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 164 CTAACCTGCGCATGGTTCGAGCTGTAACTTCCGCGGCGGCGGCTTCCTCCGACCCGACAA 223
Query 199 CCACGACCAAGAC-CAGGGAGCCACGTGGCATCATGAAGCCTCGTCCAGTGTCCCCGGAG 257
||||||||||||| | ||||||||||||||||||||||||||||||||||||||| || |
Sbjct 224 CCACGACCAAGACTC-GGGAGCCACGTGGCATCATGAAGCCTCGTCCAGTGTCCCAGGCG 282
Query 258 ATGCAGGATGTTGTCGGCGTTCCCGAAATCCCTCGCACTCAGGCTCTTAAACGCATTTGG 317
||||||||||| || |||||||| ||||||||||| ||||| ||||| ||||||||||||
Sbjct 283 ATGCAGGATGTCGTTGGCGTTCCTGAAATCCCTCGTACTCAAGCTCTCAAACGCATTTGG 342
Query 318 GCTTACATCAAGGAACACGACCTTCAAGACCCACAAAACAAGAGGGATATACTCTGCGAC 377
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 GCTTACATCAAGGAACATGACCTTCAAGACCCACAAAACAAGAGGGATATACTCTGCGAC 402
Query 378 GAGAAGCTGAAGAAGATATTTGAAGGCAAAGAACGTGTTGGGTTCTTGGAGATTGCAAAG 437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 GAGAAGCTGAAGAAGATATTTGAAGGCAAAGAACGTGTTGGGTTCTTGGAGATTGCAAAA 462
Query 438 CTCATTGGTCCTCACTTTCTCTGAAGGAATTTTGGCTGAGAGAAGACAATCATTGGCCTA 497
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 463 CTCATTGGTCCTCACTTTCTCTGAATGAATTTTGGCTGAGAGAAGACAATCATTGGCCTA 522
Query 498 TGTTTTGCTGAGCTATTAAAGGC-ATGAAAGATCAGATTACATATTAGTTAAATT-AGGG 555
||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct 523 TGTTTTGCTGAGCTACTAAAGGCCATGAAAGATCAGATTACATATTAGT-AAATTTAGGG 581
Query 556 TTTAAGAAGTTTT-ATGCAACCAAGTAGTTTATAAGCCTCTGGAGGATATCTTTTGTCGG 614
||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 582 TTTAAGAAGTTTTTATGCAACCAAGTAGTTTATAAGCCTTTGGAGGATATCTTATGTCGG 641
Query 615 TTATGTGCTCATTTGC 630
||||||||||||||||
Sbjct 642 TTATGTGCTCATTTGC 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31547044316
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5