BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491240
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34270.1 | Symbols: | TIP41-like family protein | chr4:1640... 1755 0.0
> AT4G34270.1 | Symbols: | TIP41-like family protein | chr4:16403844-16406240
REVERSE LENGTH=1254
Length=1254
Score = 1755 bits (950), Expect = 0.0
Identities = 1093/1160 (94%), Gaps = 18/1160 (2%)
Strand=Plus/Plus
Query 1 TTGGATAGTCCGGTTGGTCACAAAACTGACAATCGGCGGAGGAGAAAAGGTAGTGCCAAA 60
|||||||||||||||||||||| || |||| |||| ||||||||||||||||||||| ||
Sbjct 12 TTGGATAGTCCGGTTGGTCACACAAGTGAC-ATCGTCGGAGGAGAAAAGGTAGTGCC-AA 69
Query 61 TATTTGCCGGCGATTCAGATGGAGACGGTGGTCGATAAAGA-GATTCTTAAGTCTTCCGG 119
|||| |||||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct 70 TATTAGCCGGCGATTCAGATGGAGACGGTGGTCGATAAAGATG-TTCTGAAGTCTTCCGG 128
Query 120 GGCTGAGCTTCTTCCCGACGGACGTCGTGGGTTGCGCATCCATGGCTGGGAGATCGAAAC 179
||||||||||||||||||||||||||| || || |||||||||| |||||||||||||||
Sbjct 129 GGCTGAGCTTCTTCCCGACGGACGTCGAGGTTTACGCATCCATGACTGGGAGATCGAAAC 188
Query 180 CCTCCGTGGCACGATTCTCACTTCTCTCGCTGTCGAAGAGTGGGAAGAAAAGCTTAAGAC 239
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 189 CCTCCGCGGCACGATTCTCACTTCTCTCGCTGTCGAAGAGTGGGAAAAAAAGCTTAAGAC 248
Query 240 ATCTCACTTACCTGAAATGGTTTTTGGCGGGAATGCATTAGTCCTAAAACACTTAAGTAG 299
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||
Sbjct 249 ATCTCACTTACCTGAAATGGTTTTTGGCGAGAATGCATTAGTCCTTAAACACTTAGGTAG 308
Query 300 CAACACTAAGATTCATTTTAATGCGTTTGACGCTCTAGCGGGTTGGAAGCAGGAAGGGCT 359
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 309 CAACACTAAGATTCATTTTAATGCGTTTGACGCACTAGCTGGTTGGAAGCAGGAAGGGCT 368
Query 360 TCCACCTGTTGAAGTTCCTGCTGCGGCACAATGGAAATTCAGGAGCAAGCCGTCCCAGCA 419
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 369 TCCACCTGTTGAAGTTCCTGCTGCAGCACAATGGAAATTCAGGAGCAAGCCGTCTCAGCA 428
Query 420 GGTGATACTAGATTATGATTACACGTTTACAACGCCATACTGTGGAAGTGAAGTAGTTGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 GGTGATACTAGATTATGATTACACGTTTACAACGCCATACTGTGGAAGTGAAGTAGTTGA 488
Query 480 GAAAGACAAAGAAGCGGTTGAGGCAAAAGCTAATCCGAAGGGGGAAGCTACTCTTCAGTG 539
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 489 GAAAGACAAAGAAACGGTTGAGGCAAAAGCTAATCCAAAGGGGGAAGCTACTCTTCAGTG 548
Query 540 GGAGAACTGTGAAGATCAGATTGATTTGGCTGCTCTCTCACTTAAAGAACCTATTCTCTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 GGAGAACTGTGAAGATCAGATTGATTTGGCTGCTCTCTCACTTAAAGAACCTATTCTCTT 608
Query 600 CTATGATGAGGTAGTTTTGTATGAAGACGAGCTGGCTGACAATGGAGTGTCACTTTTGAC 659
||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||
Sbjct 609 CTATGATGAGGTAGTTTTGTATGAAGATGAACTGGCTGACAATGGAGTGTCACTTCTGAC 668
Query 660 TGTGAAAGTGAGAGTCATGCCAAGCTCATGGTTCCTCCTCTTACGATTTTGGCTTAGAGT 719
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 669 TGTGAAAGTGAGAGTCATGCCAAGCTCATGGTTCCTCCTCTTGCGATTTTGGCTGAGAGT 728
Query 720 TGATGGTGTGCTTATGAGATTGAGAGAGACTAGAATGCATTATACGTTTGGCAAAGATGA 779
|||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||
Sbjct 729 TGATGGTGTGCTTATGAGATTGAGAGAGACGAGAATGCATTATAGGTTTGGCGAAGATGA 788
Query 780 GACACCAACTGTTCTTCGTGAAAACTGTTGGAGAGAAGCTACATTTCAGTCTCTATCTGC 839
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 789 GGCACCAACTGTTCTTCGTGAAAACTGTTGGAGAGAAGCAACATTTCAGTCTCTATCTGC 848
Query 840 GAAAGGGTATCCAGTTGACTTAGCAGTCTGGAGCGACCCGAGCTCCATCAGTCAGAGGCT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GAAAGGGTATCCAGTTGACTTAGCAGTCTGGAGCGACCCGAGCTCCATCAGTCAGAGGCT 908
Query 900 TCCAGTGATTAAGCATACGACACAAAAACTGAAGATCCCTCGTAAAGTTTAAGCTGTTTA 959
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 909 TCCAGTGATTAAGCATACGACACAGAAACTGAAGATCCCTAGTAAAGTTTAAGCTGTTTA 968
Query 960 TAAAGTTGCAAGTTAAATCCAAAAGAACGGATCGATGAGCTTTCTATT-CAGTCAAA-A- 1016
||||||||||| ||| ||| |||||| || | ||||||||||||| || ||| |||| |
Sbjct 969 TAAAGTTGCAAATTATATCTAAAAGAGCGTACCGATGAGCTTTCT-TTACAGCCAAACAA 1027
Query 1017 --TACTTACTATCGAATTTGTTAATGTAAGGAGTTACTCCAGTTACTTATTGTGGTGGTT 1074
|||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1028 ACTACTTACTATTGAATTTGTTAATGTAAGGAGTTACTCCACTGACTTATTGTGGTGGTT 1087
Query 1075 TCATATGAACACTGAAACGCTCTTCCTCTTCATGTTCTTCTTACACTCTTATTG--CCAT 1132
||||||||||| | |||| | ||| | | || ||| ||||||||||||||||| || |
Sbjct 1088 TCATATGAACATTCAAAC-C-CTT--T-T-CACGTTGTTCTTACACTCTTATTGTTCCCT 1141
Query 1133 ACCTCGATCCCACCATAATT 1152
|||| | |||||||||||||
Sbjct 1142 ACCTTGTTCCCACCATAATT 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5