BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491242
Length=704
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34265.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1055 0.0
> AT4G34265.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G15000.3);
Has 76 Blast hits to 76 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:16402280-16403790
FORWARD LENGTH=731
Length=731
Score = 1055 bits (571), Expect = 0.0
Identities = 642/675 (95%), Gaps = 9/675 (1%)
Strand=Plus/Plus
Query 36 TAAAAAATGGCATGGCGCAGTGCAGCCCGGTCTTTCGTCTCCGCTACTGCTAGAACTCCG 95
|||||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||
Sbjct 60 TAAAAAATGGCATGGCGCAGTGCAGCACGCTCTTTCGTCTCCGCTACAGCTAGAGCTCCG 119
Query 96 TCTCTCCGATCTCCGCCGGCAACGCTTCCCCGCCTCCGTCCTCCCCAATCCTCTTTGCCC 155
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 TCTCTCCGATCTCCGCCGCCAACGCTTCCCCGCCTCCGTCCTTCCCAATCCTCTTTGCCC 179
Query 156 CGCCGCCGATTTGCCTCTTTCACTAATCCCAGGAATTTGGGAGAGCTTGGATGCACAGAG 215
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 180 CGCCGCCGATTTGCCTCTTTCACTAATCCCAGGAATTTGGGAGAGCTAGGATGCACAGAG 239
Query 216 TCTTTCTTGCCTCTGTACAATGTTGTGGCTGCAGCTCGACTCACATCTCACCTTAATGTT 275
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 TCATTCTTGCCTCTGTACAATGTTGTGGCTGCAGCGAGACTCACATCTCACCTTAATGTT 299
Query 276 AATCTGCGAGCTTTCTGCGAACTCTCTAACGGGAATGGAAAAGATGGGTGATGGAAGTGG 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AATCTGCGAGCTTTCTGCGAACTCTCTAACGGGAATGGAAAAGATGGGTGATGGAAGTGG 359
Query 336 ATTTTCAGTCGCTGGCAAGAGAGGTGCTACTGCTTTGTACTTGAATGGACAAAGTGGGAT 395
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 360 ATTTTCAGTCGCTGGCAAGAGAGGTGCTACTGCTTTGTACTTGAATGCACAAAGTGG-AT 418
Query 396 GCATCAGTTATCTTGAAGCAGTTGGAGACTTGAAAAAAGGGGTGTACCAAGAAGAACTCA 455
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 419 GCATCAGTTATCTTGAAGCAGTTGGAGACTTGAGAAAAGGGGTGTACCAAGAAGAACTCA 478
Query 456 TTGGTTGTTTTGTGTTCCATTAGGAACCAAAAACTAAATTACATTATT-TCTATCTTCCT 514
|||||||||||||||||||||||||||||||||||| || |||||||| || ||||||||
Sbjct 479 TTGGTTGTTTTGTGTTCCATTAGGAACCAAAAACTATAT-ACATTATTATCGATCTTCCT 537
Query 515 TCACTTTTGACAATTTCCAGTTTTAGAAT--C--TGGATTTCCCTTCATATTTCTTGTTG 570
|| |||||| ||||||||||||||||||| | |||||||| |||||||||||||||||
Sbjct 538 TCGCTTTTGTCAATTTCCAGTTTTAGAATATCACTGGATTTCTCTTCATATTTCTTGTTG 597
Query 571 TTTAGCCCAATGGCTTTGAATACTTGAGGGTAGATTCAGCATATTCTTCAAGAACCATTG 630
||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct 598 TTTAGCCCAATGGCTTTAAATACTTGAGGGTAGATTCAGCAAATTCTTGAAGAACCATTG 657
Query 631 TTTCATCTTTGTATTTATAATGTTACTCA-CTCTCTTCGGGTTTACTGAAAGGAATTTAA 689
||||||| ||||||||||||||||| | | ||| |||||||||| |||||||||||||||
Sbjct 658 TTTCATCGTTGTATTTATAATGTTA-TGAACTCCCTTCGGGTTTCCTGAAAGGAATTTAA 716
Query 690 AGAAAACTTTCTTAT 704
|||||||||||||||
Sbjct 717 AGAAAACTTTCTTAT 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34108985813
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5