BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491244
Length=1727
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34250.1 | Symbols: KCS16 | 3-ketoacyl-CoA synthase 16 | chr... 2604 0.0
> AT4G34250.1 | Symbols: KCS16 | 3-ketoacyl-CoA synthase 16 | chr4:16394708-16396495
FORWARD LENGTH=1788
Length=1788
Score = 2604 bits (1410), Expect = 0.0
Identities = 1651/1762 (94%), Gaps = 38/1762 (2%)
Strand=Plus/Plus
Query 1 CACACCAAGAATTTATATCACTAAAATGGATT-CCCCGATGAAGAAGGTAAAAATCTTTA 59
|||| |||||||||| |||||||||||||||| |||| |||||||||||||||||||||
Sbjct 17 CACATCAAGAATTTAAATCACTAAAATGGATTACCCC-ATGAAGAAGGTAAAAATCTTTT 75
Query 60 TCAACTACCTCATGGCACATCGCTTCAAGCTCTGCTTCTTACCATTAATGGTTTCTATAG 119
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 76 TCAACTACCTCATGGCGCATCGCTTCAAGCTCTGCTTCTTACCATTAATGGTTGCTATAG 135
Query 120 CCATGGAGGCGTCTCGTCTTTCCACACAAGATCTCCAAAACCTTTACCTCTACTTACAAA 179
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 136 CCGTGGAGGCGTCTCGTCTTTCCACACAAGATCTCCAAAACTTTTACCTCTACTTACAAA 195
Query 180 ACAA-CATCACATCTCTAACCATGTTCTTTCTTTATCTCGCTCTCGGGTCGACTCTTTAC 238
|||| || ||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 196 ACAACCA-CACATCTCTAACCATGTTCTTCCTTTACCTCGCTCTCGGGTCGACTCTTTAC 254
Query 239 CTCATGACCCGACCCAAACCCGTTTATCTCGTTGACTTTAGCTGCTACCTCCCACCGTCG 298
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 CTCATGACCCGGCCCAAACCCGTTTATCTCGTTGACTTTAGCTGCTACCTCCCACCGTCG 314
Query 299 CATCTCAAAGCTAGCATCCAAAAGATCATGGACCACGTAAGGCGTGTAAGAGAAGCAGGC 358
||||||||||| |||| ||| | ||||||| | |||||||||| |||| |||||||||||
Sbjct 315 CATCTCAAAGCCAGCACCCAGAGGATCATGCAACACGTAAGGCTTGTACGAGAAGCAGGC 374
Query 359 GCGTGGAAGCAAGAGTCCGATTACTTGATGGACTTCTGCGAGAAGATTCTAGAACGTTCC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GCGTGGAAGCAAGAGTCCGATTACTTGATGGACTTCTGCGAGAAGATTCTAGAACGTTCC 434
Query 419 GGTCTAGGCCAAGAGACGTACATACCTGAAGGTCTTCAAAGTTTGCCACTACAACAGACT 478
||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||| |
Sbjct 435 GGTCTAGGCCAAGAGACGTACGTACCCGAAGGTCTTCAAACTTTGCCACTACAACAGAAT 494
Query 479 TTGGCTGTGTCACGTAAAGAGACGGAAGAAGTTATCATTGGAGCGGTCGATAATCTGTTT 538
|||||||| ||||||| ||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 495 TTGGCTGTATCACGTATAGAGACGGAGGAAGTTATTATTGGTGCGGTCGATAATCTGTTT 554
Query 539 CGCAACACCGGAATAAGCCCGAACGATATAGGTATATTGGTGGTGAATTCAAGCACTTTC 598
|||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 555 CGCAACACGGGAATAAGCCCTAGTGATATAGGTATATTGGTGGTGAATTCAAGCACTTTT 614
Query 599 AATCCAACTCCTTCGTTATCAACTATCTTAGTGAATAAGTTTAAACTTAGGGATGATATA 658
|||||||| |||||| |||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 615 AATCCAACACCTTCGCTATCAAGTATCTTAGTGAATAAGTTTAAACTTAGGGATAATATA 674
Query 659 AAGAGCTTGAATCTTGGTGGGATGGGGTGTAGCGCTGGAGTCATCGCTATCGATGCTGCT 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 675 AAGAGCTTGAATCTTGGTGGGATGGGGTGTAGCGCTGGAGTCATCGCTATCGATGCGGCT 734
Query 719 AAGAGCTTGTTACAAGTTCATAGAAACACTTATGCACTTGTGGTGAGCACGGAGAACATC 778
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 735 AAGAGCTTGTTACAAGTTCATAGAAACACTTATGCTCTTGTGGTGAGCACGGAGAACATC 794
Query 779 ACTCAAAACTTGTACTTGGGTAACAACAAATCAATGTTGGTTACAAATTGTTTGTTCCGG 838
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 795 ACTCAAAACTTGTACATGGGTAACAACAAATCAATGTTGGTTACAAACTGTTTGTTCCGT 854
Query 839 ATAGGTGGGGCCGCGATTTTGCTTTCTAACCAGTCTATAGATCGTAAACGCGCGAAATAC 898
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 855 ATAGGTGGGGCCGCGATTTTGCTTTCTAACCGGTCTATAGATCGTAAACGCGCAAAATAC 914
Query 899 GAGCTTGTTCACACCGTGCGGGTCCATACCGGAGCAGATGACCGATCCTATGAATGTGCA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 GAGCTTGTTCACACCGTGCGGGTCCATACCGGAGCAGATGACCGATCCTATGAATGTGCA 974
Query 959 ACTCAAGAAGAGGATGAAGATGGCGTAGTCGGAGTTTCCTTGTCAAAGAATCTACCAATG 1018
|||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 975 ACTCAAGAAGAGGATGAAGATGGCATAGTTGGGGTTTCCTTGTCAAAGAATCTACCAATG 1034
Query 1019 GTAGCTGCAAGGACCCTAAAGATCAATATCGCAACTTTGGGTCCACTTGTTCTTCCCTTA 1078
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1035 GTAGCTGCAAGAACCCTAAAGATCAATATCGCAACTTTGGGTCCGCTTGTTCTTCCCATA 1094
Query 1079 AGCGAGAAGTTCCACTTCTTTGTGAGGTTCGTTAAAAAGAAGTTTATCAACCCAAAACTC 1138
||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 1095 AGCGAGAAGTTTCACTTCTTTGTGAGGTTCGTTAAAAAGAAGTTTCTCAACCCCAAGCTA 1154
Query 1139 AAGCACTACATTCCGGATTTCAAGCTCGCATTCGAGCATTTCTGTATCCATGCGGGTGGT 1198
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 AAGCATTACATTCCGGATTTCAAGCTCGCATTCGAGCATTTCTGTATCCATGCGGGTGGT 1214
Query 1199 AGAGCGCTAATTGATGAGATGGAGAAGAATCTTCATCTAACTCCATTAGACGTTGAGGCT 1258
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1215 AGAGCGCTAATTGATGAGATGGAGAAGAATCTTCATCTAACTCCACTAGACGTTGAGGCT 1274
Query 1259 TCAAGAATGACATTACACAGGTTTGGTAATACCTCTTCGAGCTCCATTTGGTACGAGTTG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 TCAAGAATGACATTACACAGGTTTGGTAATACCTCTTCGAGCTCCATTTGGTACGAGTTG 1334
Query 1319 GCTTACACAGAAGCCAAAGGAAGGATGAAGAAAGGAGATAGGATTTGGCAGATTGCGTTG 1378
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1335 GCTTACACAGAAGCCAAAGGAAGGATGACGAAAGGAGATAGGATTTGGCAGATTGCGTTG 1394
Query 1379 GGGTCAGGTTTTAAGTGTAATAGTTCTGTTTGGGTGGCTCTTCGTAACGTCAAGCCTTCC 1438
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1395 GGGTCAGGTTTTAAGTGTAATAGTTCAGTTTGGGTGGCTCTTCGTAACGTCAAGCCTTCT 1454
Query 1439 GCTAATAATCCTTGGGAACACTGTCTACACAAATATCCAGTTGAGATCGATATAGATTTA 1498
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1455 ACTAATAATCCTTGGGAACAGTGTCTACACAAATATCCAGTTGAGATCGATATAGATTTA 1514
Query 1499 AAAGAGTGAGCGATTCTATTGATCGTTAT-AAGTTATGATACGAATCAAGAAGATAGAG- 1556
|||||||||| ||||||||| |||||||| |||||||||||||||| ||||||||||||
Sbjct 1515 AAAGAGTGAGTGATTCTATTTATCGTTATTAAGTTATGATACGAATTAAGAAGATAGAGA 1574
Query 1557 -G------C-G-T---ATA----GACTATCGTACTTTAATTTGGTCGGTCCAAAAATGTA 1600
| | | | ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1575 CGTATAGACTGGTTTTATATATCGACTATCGTACTTTAATTTGGTCGGTCCAAATATGTA 1634
Query 1601 CAACTAATCTATCATTTCTCTCTGTGTTGTTCTCTTTTAAGATTT-TT-T---------- 1648
||||||||||||| |||||| ||| ||||||||||||||||||| || |
Sbjct 1635 CAACTAATCTATCCGTTCTCTATGTATTGTTCTCTTTTAAGATTTCTTGTTTTTTTTTTC 1694
Query 1649 ---GGTTGTTGTGATGCTTAATTCCTCTCGTCAACTATATAAGAATTAAGTTTTGATGCG 1705
||||||| ||||||||||||||||||||||||| | ||||||| ||| |||||||||
Sbjct 1695 TTTGGTTGTTATGATGCTTAATTCCTCTCGTCAACTGTTTAAGAAT-AAGATTTGATGCG 1753
Query 1706 TGGTAGTGGACTTGTTTTCACA 1727
||||||||||||||||||||||
Sbjct 1754 TGGTAGTGGACTTGTTTTCACA 1775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85391127045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5