BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491251
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34215.1 | Symbols: | Domain of unknown function (DUF303) ... 1245 0.0
> AT4G34215.1 | Symbols: | Domain of unknown function (DUF303)
| chr4:16380077-16381307 REVERSE LENGTH=1024
Length=1024
Score = 1245 bits (674), Expect = 0.0
Identities = 764/807 (95%), Gaps = 7/807 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGGAGAATCTATAACTCCCGGTCCCGGCGAAGATAAACTGGAGATCCAATCTCCA 60
|||||||||| |||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct 116 ATGGAAGGAGGATCTATCACTCCCGGT------GAAGATAAACCGGAGATCCAATCTCCA 169
Query 61 ATTCCGCCAAATCAGATCTTCATACTCTCCGGACAAAGCAATATGGCCGGACGCGGCGGC 120
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 170 ATTCCACCAAATCAGATCTTCATACTCTCTGGACAAAGCAATATGGCAGGACGCGGCGGC 229
Query 121 GTCGTCAAAGATCACCACCACAATCGCTGGGTGTGGGATAAAATCTTTCCACCGGAATGC 180
||| ||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 230 GTCTTCAAAGACCACCACAACAATCGCTGGGTGTGGGATAAAATCCTTCCACCGGAATGC 289
Query 181 GCACCAAACTCATCGATCCTCCGCCTGAGCGCAGATCTCCGGTGGGAAGAAGCTCACGAG 240
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 290 GCACCAAACTCATCGATCCTCCGCCTGTCCGCAGATCTCCGGTGGGAAGAAGCACACGAG 349
Query 241 CCACTCCACGTTGACATCGACACCGGTAAAGTGTGTGGAATAGGTCCAGGAATGGCGTTC 300
||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 350 CCACTACACGTTGACATTGACACAGGTAAAGTGTGTGGAGTAGGTCCAGGAATGGCGTTC 409
Query 301 GCAAACGCGGTGAAGAATCGCCTGGAAACAGATTCGGCTGTGATCGGGTTGGTTCCGTGC 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 410 GCTAACGCGGTGAAGAATCGCCTGGAAACAGATTCGGCTGTGATCGGGTTGGTGCCGTGC 469
Query 361 GCCTCCGGTGGAACGGCGATAAAACAGTGGGAGCGTGGAAGCCACTTGTACGAGAGGATG 420
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 470 GCTTCCGGTGGAACGGCGATAAAAGAGTGGGAGCGTGGAAGCCACTTGTACGAGAGGATG 529
Query 421 GTTAAGAGAACGGAGGAGAGTAGGAAATGCGGCGGGGAGATTAAGGCGGTGCTGTGGTAT 480
|| |||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct 530 GTCAAGAGAACGGAGGAGAGTAGGAAATGCGGCGGAGAGATCAAGGCGGTGTTGTGGTAT 589
Query 481 CAAGGAGAGAGTGACGTGTTGGACATCCATGACGCCGAGAGCTACGGGAGCAATATGGAC 540
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 590 CAAGGAGAGAGTGACGTGTTGGACATCCATGACGCCGAGAGCTACGGGAACAATATGGAT 649
Query 541 CGTTTGATTAAGAACCTCCGTCATGATCTCAACCTTCCTTCTCTTCCCATTATTCAGGTG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 CGTTTGATTAAGAACCTCCGTCATGATCTCAACCTTCCTTCTCTTCCCATTATTCAGGTG 709
Query 601 GCAATAGCATCGGGAGGAGGATACATAGATAAGGTGAGAGAAGCACAGTTGGGTCTGAAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 710 GCAATAGCATCGGGAGGAGGATACATAGATAAGGTGAGAGAAGCACAGTTGGGACTGAAA 769
Query 661 CTTTCGAATGTGGTCTGTGTAGACGCTAAGGGATTGCCGCTAAAGTCTGACAATCTTCAC 720
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 770 CTGTCGAATGTGGTCTGTGTAGATGCTAAGGGATTGCCGCTAAAGTCCGACAATCTTCAC 829
Query 721 TTAACCACTGAGGCTCAAGTCCAGCTTGGTCTCTCCTTAGCACAAGCTTACCTTTCCAAC 780
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 830 TTAACCACCGAGGCTCAAGTCCAGCTTGGTCTCTCCTTAGCTCAAGCTTACCTTTCCAAC 889
Query 781 TTCTGTTAGACAATCAATTGAAGATCG 807
||||| ||||||||||| | ||| |||
Sbjct 890 TTCTGCTAGACAATCAAGT-AAGTTCG 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5