BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491257
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34140.1 | Symbols: | D111/G-patch domain-containing protei... 830 0.0
> AT4G34140.1 | Symbols: | D111/G-patch domain-containing protein
| chr4:16350800-16354264 FORWARD LENGTH=1977
Length=1977
Score = 830 bits (449), Expect = 0.0
Identities = 533/574 (93%), Gaps = 3/574 (1%)
Strand=Plus/Plus
Query 427 GGAGACGATGATGCTGAGGAACTTGAAGAGGGAGAATGGATTCCTGAAGACGATTTTGAT 486
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 656 GGAGATGATGATGCTGAGGAACTTGAAGAGGGAGAATGGATTCCTGAAGAAGATTTTGAT 715
Query 487 CCACAGGAAGAGAACTTTGATGAAGCTGCTCCTTCAAGCGAGGAAGAAAGATGGCTAGCA 546
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CCACAAGAAGAGAACTTTGGTGAAGCTGCTCCTTCAAGCGAGGAAGAAAGATGGCTAGCA 775
Query 547 CAATATGGTCAAGTCGTCGAATCCCCTGGGAAGACCCTGCCTGAGATCTCGTCTGTTGAT 606
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 776 CAATATGGTCAAGTCATCGAATCCCCTGGGAAGACCCTGCCTGAGATCCCGTCTGTTGAT 835
Query 607 TTGTGGGATTGGAAACTTGTATGTGAATCCAGAGAAGCTGACAATGCACAGGTGGCTAGG 666
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 836 TTGTGGGATTGGAAACTTGTATGTGAAACCAGAGAAGCTGACAATGAACAGGTGGCTAGG 895
Query 667 TTAGTAGGGAGGCTAGTCAGACGGTCTGCCAATCTTCATCCATCTGTGGCTTCTGGTGGC 726
|||||||||||||| ||||||| ||| || || |||||||||||||||| ||||||||||
Sbjct 896 TTAGTAGGGAGGCTGGTCAGACAGTCGGCGAACCTTCATCCATCTGTGGTTTCTGGTGGC 955
Query 727 ACACTTCTCAAAACTGCTCCAATTTGTGAAGCACGGCTTCACCTAGTGCGAGTTAGGACA 786
|||||| | |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 956 ACACTTTTAAAAACTGCCCCAATTTGTGAAGCTCGGCTTCACCTAGTGCGAGTTAGGACA 1015
Query 787 GGTCAGGTCTACAAACTTCAAAATCCTAGTGCCAAATACATTGCATCCTTGTCGGTATAT 846
||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1016 GGTCAGGTCTATAAACTTCGAAATCCTAGTGCCAAATACCTTGCATCCTTGTCAGTATAT 1075
Query 847 GACTCCTCCAACCCAACAAAAGATTGGGGATTCCCTGATATTTCAACTGCATGGCAAAAT 906
||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1076 GACGCCTCCAACCCAACAAAAGATTGGGAATTCCCTGATATTTCAACTGAATGGCAAAAT 1135
Query 907 CCTGATACGAAACACAAATCTAAGAAGGTGAAACCAAAAACTAACTGCAAACTTACAGTG 966
|||||||| |||| |||| | ||||||| ||||||||||| | ||||||||||||||
Sbjct 1136 CCTGATACAAAACGCAAAGCCAAGAAGGGGAAACCAAAAAGGGCCAGCAAACTTACAGTG 1195
Query 967 AAGCCTCGTGAAGTCGACAT--T-GAAGAGCAGA 997
|||||| ||||||| ||||| | |||||| |||
Sbjct 1196 AAGCCTAGTGAAGTAGACATGATTGAAGAGAAGA 1229
Score = 669 bits (362), Expect = 0.0
Identities = 405/425 (95%), Gaps = 6/425 (1%)
Strand=Plus/Plus
Query 916 AAACACAAATCTAAGAAGGTGAAACCAAAAACTAACTGCAAACTTACAGTGAAGCCTC-- 973
|||| | || ||||||||||||||||||||||| |||||||||| ||||||||||| |
Sbjct 1322 AAACGCGAAGCTAAGAAGGTGAAACCAAAAACTGACTGCAAACTCACAGTGAAGCCACGA 1381
Query 974 G-TGAAGTCGAC---ATTGAAGAGCAGAGAAGCTGTTCATACAGAGATAGAGCCGCTGAG 1029
| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 GATGAAGTCAACATGATTGAAGAGCAGAGAAGCTGTTCATACAGAGATAGAGCCGCTGAG 1441
Query 1030 AGAAGAAATTTGCATGGTGGATATGGTGTTGGACCAGGTCAAAAAGGAACAACGGTGGGC 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1442 AGAAGAAATTTGCATGGTGGATATGGTGTTGGACCAGGTCAAAAAGGAACAACAGTGGAC 1501
Query 1090 CATAACACGGACGAGCATTCAGTTCCCGACACTGCTTCTGAAGAGGACACTGTAGCAGAA 1149
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1502 CATAACACGGACGAGCATTCAGTTCCCGACACTGGTTCTGAAGAGGATACTGTAGCAGAA 1561
Query 1150 GCATTGGAGCTATCATTTGGATCTGGAAGTTATGCAAGGAGGATAATGGGAAACATGGGT 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 GCATTGGAGCTATCATTTGGATCTGGAAGTTATGCAAGGAGGATAATGGGAAACATGGGT 1621
Query 1210 TGGAAGGAGGGTGAGACGCTCGGGAAGAATACAAAAGGTTTGGTTGAACCGATACAAGCA 1269
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1622 TGGAAGGAGGGTGAGACGCTAGGGAAGAATACAAAAGGTTTGGTTGAACCGATACAAGCA 1681
Query 1270 GTGGGCAACACTGGGAATGTAGGGCTAGGTTTTCCTCAAAGGAGAAGGAAATAATCTGAG 1329
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1682 GTGGGCAACACTGGGAATGTAGGGCTAGGATTTCCTCAAAGGAGAAGGAAATAATATGAG 1741
Query 1330 GTACA 1334
|||||
Sbjct 1742 GTACA 1746
Score = 318 bits (172), Expect = 8e-86
Identities = 232/258 (90%), Gaps = 16/258 (6%)
Strand=Plus/Plus
Query 183 ATCGCA-TAGTGGGTTTTACCATGACCCAAATGCTGGTTGGTATTATTGTATCAAGGATG 241
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 225 ATCACAGTAGTGGGTTTTACCATGACCCAAATGCTGGTTGGTATTATTGTAGCAAGGATG 284
Query 242 GTCGTTACTACAAGCATGAAAATGGCGAATATGTTCCCTTGGAATACGACGAGTCTGCCG 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 285 GTCGTTACTACAAGCATGAAAATGGCGAATATGTTCCCTTGGAATACGACGAGTCTTCGG 344
Query 302 TGAACCCTCCTCGAGATATTGTCACTTATGAGCCATCTCAAGATGATGACTCAGGCAGAA 361
||||||||||| ||||||||||||| |||||||||||| ||||||| || ||||||||
Sbjct 345 TGAACCCTCCTGGAGATATTGTCACCTATGAGCCATCTGAAGATGA---CTTAGGCAGAA 401
Query 362 AAT----AT-------G-CTGAGAATGTAGAAAATGGATGTGAAGTTTCACTGAGTAATC 409
||| || | |||||||||| |||||||||||||||||||| ||||||||||
Sbjct 402 AATGTGCATTTTCTCAGGCTGAGAATGTTGAAAATGGATGTGAAGTTTCTCTGAGTAATC 461
Query 410 CTGGAGAAACTCCTTCAG 427
||||||||||||||||||
Sbjct 462 CTGGAGAAACTCCTTCAG 479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73845001695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5