BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491267
Length=2746
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34040.1 | Symbols: | RING/U-box superfamily protein | chr4... 4017 0.0
> AT4G34040.1 | Symbols: | RING/U-box superfamily protein | chr4:16304280-16308679
REVERSE LENGTH=2837
Length=2837
Score = 4017 bits (2175), Expect = 0.0
Identities = 2587/2778 (93%), Gaps = 60/2778 (2%)
Strand=Plus/Plus
Query 1 TAATCTCTAGGCCTCTTAATCCTTGTCTTCCCTCATCCACTGCTTCTCtttttttttttt 60
||||||||| |||||||||||| | |||||||||||||||||| | || |||||
Sbjct 18 TAATCTCTACGCCTCTTAATCC-TCTCTTCCCTCATCCACTGC-T-TC-------TTTTT 67
Query 61 ttAATAACCCATTTCATCTCTTTCCCCTTTTATGCTCTTTTCATTCTTCATCTTCTGGGG 120
|||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| ||
Sbjct 68 TTAATAACCCATTTCATCTCTTTCCCCTTTTACGCTCTTTTCTTTCTTCATTTTCTGTGG 127
Query 121 AAATTTTGAGtttttttCTTTGTCAATTAAAGAGATT-TTTAAGGGAGGGCAACCA--CA 177
||||||| || |||||| ||| |||||||||| || ||| || || || | ||
Sbjct 128 AAATTTTCAGAGCTTTTCTGTGTAAATTAAAGAG-TTCTTT-TTTGAAGG-AAATAGGCA 184
Query 178 ATATCCTGATGATAATTAAACAACCGGAAAATTCAATAAATGAAACGCCTTTAATTG-TT 236
|| || | ||| ||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 185 ATCTCATCCTGAGAATCAAACAACCGGAAAATTCAATAAATGAAACGCCTTTAATTGTTT 244
Query 237 TTTCTTACAAAAAATTCTAAGCAGATTACTTTGGAGGAGACGACGAATTTGATTGGGATT 296
|||||||| |||| |||||||||||||||||||| |||||| | || ||||||| |||
Sbjct 245 TTTCTTAC-AAAACTTCTAAGCAGATTACTTTGGCGGAGAC--C-CATCTGATTGGTATT 300
Query 297 TTTGCAGGTACAAAGTT-TCAGATATTCCAACTGGCCTGGAGCTACATTTCTGAGCCTGG 355
||||||| || ||| | || | |||||||||||||||||||||| || |||||||
Sbjct 301 TTTGCAGATATTCCGTTCTTGGA-GTACCAACTGGCCTGGAGCTACATTCCTTAGCCTGG 359
Query 356 AGCTAAATAAGAGGCTGACCCTTTGAAATCATA-ATGGTTTCCTCAAGAACTTAACAAAT 414
|| ||||||| |||||||||||||||||||| | ||||||||||||||||||||| || |
Sbjct 360 AG-TAAATAATAGGCTGACCCTTTGAAATCA-ACATGGTTTCCTCAAGAACTTAATAACT 417
Query 415 TTTCATTGGTTTCTGTCCTGGA-----------------G---GAGGTATAAATAAGTCC 454
|||| |||||||||||||||| | ||||||| |||||||||
Sbjct 418 TTTCGCTGGTTTCTGTCCTGGAGCGTTGTTGTGTGTTTGGTCAGAGGTATTAATAAGTCC 477
Query 455 AATGCAAGGTCCACAAAGCACTGGTGATTCATCGACTGGAATAAATTATGCAGATGGAGA 514
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AATGCAAGGTCCACGAAGCACTGGTGATTCATCGACTGGAATAAATTATGCAGATGGAGA 537
Query 515 ACCCATCCGTACCACCAATTCAGAGACTACTTCGAATAGCATCCTGAATCCAGTGGATGT 574
||||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 538 ACCCATCTGTAGCACCAATTCAGAGACTACTTCCAATAACATCCTGAATCCAGTGGATGT 597
Query 575 TCAGTTTCCACACAATACTACAGGTTCAGGACGACCAACTTACCCAAGCTCTAGCTCGCA 634
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 598 TCAGTTTCCAAACAATACTACAGGTTCAGGACGACCAACTTACGCAAGCTCTAGCTCGCA 657
Query 635 TGTTGTTCAAAATCATAACTGGTGGAGTTTTGGTGAATCCAGCTCTAGATTGGGGCCTTC 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TGTTGTTCAAAATCATAACTGGTGGAGTTTTGGTGAATCCAGCTCTAGATTGGGGCCTTC 717
Query 695 TGATCAGGTCAATTCTATTGGTTCAAAGACAGATCGCCAGCTTCCCTCAGACGGCTATGG 754
|||||| | ||||| | |||||||||||| ||||| ||||||| |||||| ||||||||
Sbjct 718 TGATCATTTAAATTCCAATGGTTCAAAGACTGATCGACAGCTTCTCTCAGATGGCTATGG 777
Query 755 ATTTGAGGAAGAGCAATCAGGTATCTTGTTACCTGGAGAGTCCTTTTTGCGTGGGTCAAG 814
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 778 ATTTGAGGAAGGGCAATCAGGTATGTTGTTACCTGGAGAGTCCTTTTTGCGTGGGTCAAG 837
Query 815 CTCTAATCATATGTTAGGGCATGTAAATCTGGGCAAGGACATGGACATTGGTAGTGGTCT 874
||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CTCTAGTCATATGTTAAGTCATGTAAATCTGGGCAAGGACATGGACATTGGTAGTGGTCT 897
Query 875 GCAGACTTCAGGGGTCGTTATCCGCCATAATAACTGTGAGAGTTCATTGGGAAGCTCAAG 934
||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 898 GCAGACTTCTGGGGTCGTTATCCGCCATAATAACTGCGAGACTTCATTGGGAAGCTCAAG 957
Query 935 TCAAACCGCAGAGGAGAGAAGCAGTGGTCCAGGCTCTTCGTTGGGTGGTCTAGGCTCATC 994
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 958 TCAAACCGCAGAGGAGAGAAGCAGTGGTCCAGGTTCTTCGTTGGGTGGTCTAGGTTCATC 1017
Query 995 ATGCAAAAGAAAGGCTCTTGAAGGAGCTCCTAGCCATTCTTTTCCTGGTGAAAGTCATGG 1054
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1018 CTGCAAAAGAAAGGCTCTTGAAGGAGCTCCTAGCCATTCTTTCCCTGGTGAAAGTCATGG 1077
Query 1055 TTGCTTTTTTCAAACTGAGAGTGGTGCTTGGAATGAGGGTCTTGCTCAATATGATGCTTC 1114
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTGCTTTTTTCAAACTGAGAATGGTGCTTGGAATGAGGGTCTTGCTCAATATGATGCTTC 1137
Query 1115 AAGTAGCTTAAGTTTGTCTATGCCCTCACAAAATTCTCCAAATGTTAATAATCAGTCTGG 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 AAGTAGCTTAAGTTTGTCTATGCCCTCACAAAATTCTCCAAATGTTAATAATCAGTCTGG 1197
Query 1175 TATACCGGAACCAAGATTTGGATTGGGTGGTGGAAGAGCAGTTACAGCAAGTGCTTTTCC 1234
| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1198 TCTACCAGAACCAAGATTTGGATTGGGTGGTGGGAGAGCAGTTACAGCAAGTGCTTTTCC 1257
Query 1235 TTCTACAAGAAGCACTGAAACCATATCTAGACCCGGCAGGCGGTTAAATCCTGGGCAGCC 1294
||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1258 TTCTACAAGAAGCACGGAAACCATCTCTAGACCTGGCAGGCGGTTAAATCCTGGGCAGCC 1317
Query 1295 ACCGGAGTCAGTAGCATTCAGCTTCTCACAGTCCGGTAGTTCTGTGCGTCAGCAACAGCA 1354
||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1318 ACCAGAGTCAGTTGCATTCAGCTTCACACAGTCCGGTAGTTCTGTGCGTCAGCAACAGCA 1377
Query 1355 GTTACCAGCAACTTCTCCTTTTGTTGACCCTCTGGATGCAAGAGCAATACCAGTTACAGG 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GTTACCAGCAACTTCTCCTTTTGTTGACCCTCTGGATGCAAGAGCAATACCAGTTACAGG 1437
Query 1415 TAGCTCAAGCAGTGGTGATGGTCAGCCAAGTATGATCCACCTTCCTGCATTGACAAGAAA 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TAGCTCAAGCAGTGGTGATGGTCAGCCAAGTATGATCCACCTTCCTGCATTGACAAGAAA 1497
Query 1475 TATACACCAATTTGCTTGGAGTGCTGCTTCCAGTTCGAGAACAAACAATATGCCTGAAGA 1534
||||||||||||||||||||||||| | || ||||||||| |||||| ||||||||||||
Sbjct 1498 TATACACCAATTTGCTTGGAGTGCTTCGTCTAGTTCGAGAGCAAACAGTATGCCTGAAGA 1557
Query 1535 GGGATTTGGACCACCATGGGACGCGCCAAGAATCAACTCAGAGCAGCCAGTCTTTACTAC 1594
|||| || | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1558 GGGA-TT-G-TCACCATGGGACGCGCCAAGAATAAACTCAGAGCAGCCAGTCTTTACTAC 1614
Query 1595 ACCTGCAACTGAAACGAGAGATCCAGTGCAGGATCAATTTAGTTGGAATTTCACTCGTGG 1654
|||||||| |||||||||| |||||||||||||||| ||| |||||| ||||||||||||
Sbjct 1615 ACCTGCAAATGAAACGAGAAATCCAGTGCAGGATCAGTTTTGTTGGAGTTTCACTCGTGG 1674
Query 1655 AAACCCTAGTACATCTGGAGATTCTCCCTTTGTTCCTCGAGCAGGATCGAGTTCAGGGAT 1714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 AAACCCTAGTACATCTGGAGATTCTCCCTTTGTTCCTCGAGCAGGATCGAGTTCAGGGAT 1734
Query 1715 CCATGGTTTGCAGCAGAATCCCACTTGGGTTACTCCCCATAATCAATCAAGAATATCAGA 1774
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 CCATGGTTTGCAGCCGAATCCCACTTGGGTTACTCCCCATAATCAATCAAGAATATCAGA 1794
Query 1775 AGTTGCTCCGTGGTCTTTATTTCCTAGTATCGAATCTGAATCTGCTACTCATGGTGCTTC 1834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 AGTTGCTCCGTGGTCTTTATTTCCTAGTATCGAATCTGAATCTGCTACTCATGGTGCTTC 1854
Query 1835 GCTTCCATTACTACCCACAGGGCCTTCTGTTTCTTCGAACGAAGCTGCAGCGCCGTCTGG 1894
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1855 TCTTCCATTACTACCCACAGGGCCTTCTGTTTCCTCGAATGAAGCTGCAGCGCCGTCTGG 1914
Query 1895 ATCTAGTAGTCGCAGTCATCGCTCTCGACAAAGAAGATCAGGATTGTTACTGGAAAGGCA 1954
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1915 ATCTAGTAGTCGTAGTCATCGCTCTCGACAAAGAAGATCGGGATTATTACTGGAAAGGCA 1974
Query 1955 AAATGATCATCTCCATTTGCGTCACTTAGGAAGAAGCTTAGCTGCTGATAATGATGGAAG 2014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 AAATGATCATCTCCATTTGCGTCACTTAGGAAGAAGCTTAGCTGCTGATAATGATGGAAG 2034
Query 2015 GAACCGGCTGATTTCCGAGATACGGCAGGTGTTGAGTGCCATGCGAAGAGGGGAGAATTT 2074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2035 GAACCGGCTGATTTCCGAGATACGGCAGGTGTTGAGTGCCATGCGAAGAGGGGAGAATTT 2094
Query 2075 ACGGTTTGAGGATTATATGGTATTCGATCCACTGATCTACCAAGGTATGGCCGAGATGCA 2134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2095 ACGGTTTGAGGATTATATGGTATTCGATCCACTGATCTACCAAGGTATGGCCGAGATGCA 2154
Query 2135 TGATAGGCATCGGGATATGCGTCTTGATGTTGATAACATGTCGTATGAGGAGCTATTAGC 2194
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2155 TGATAGGCATCGGGATATGCGTCTTGATGTTGATAACATGTCATATGAGGAGCTATTGGC 2214
Query 2195 ACTTGGGGAACGCATAGGAGATGTGAGCACTGGTCTAAGCGAAGAGGTGATCCTGAAAGC 2254
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2215 ACTTGGGGAACGCATAGGAGATGTGAGCACTGGTCTAAGCGAAGAGGTGATCCTGAAAGT 2274
Query 2255 AATGAAACAGCACAAACATACATCTTCTGCTGCTGGATCTCACCAGGACATGGAGCCTTG 2314
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 2275 AATGAAACAGCACAAACATACATCATCCGCTGCTGGCTCTCACCAGGACATGGAGCCTTG 2334
Query 2315 CTGTGTCTGTCAGGAAGAGTATGCAGAAGGCGATGATCTTGGAACCCTGGGATGTGGTCA 2374
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 2335 CTGTGTCTGTCAGGAAGAGTATGCAGAAGGAGATGATCTTGGAACACTGGGATGTGGTCA 2394
Query 2375 TGAATTTCACACTGCATGTGTCAAGCAATGGCTGATGCTCAAGAATCTCTGCCCAATTTG 2434
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 2395 TGAATTTCACACTGCCTGCGTCAAGCAATGGCTGATGCTCAAGAATCTCTGCCCAATTTG 2454
Query 2435 TAAGACAGTGGCTTTATCGACATAAAAGCACTAGT-CCTTCATCATCGTCCTCTTTCCCT 2493
|||||| |||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 2455 TAAGACTGTGGCTTTATCGACATAAAAGCACC-GTTCCTTCATCCTCGTCCTCTTTCCCT 2513
Query 2494 ATCTCCTCCCAACCCATTGTGATCCTTGAAGTGAAAGaaaaaaaaGGAGAAAAAGAGATC 2553
|||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 2514 ATCTCCTCCCAACCTATTGTGATCCTTGAAATGAAAGAAAAAA--GGAGAAAAAGAGATC 2571
Query 2554 GTG-AAGAGCTCGGTTCTGTCTTACCCGCATTGATACCAAGAGAGAGTTGAAACAAGGAA 2612
| | ||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2572 GCGTAAGAGGTCGCTTCTGTCTTACCCGCATTGATATCAAGAGAGAGTTGAAACAAGGAA 2631
Query 2613 GGGCGTGTGATGAATGATC-A-C-T-GTGTAGAAGCATCATGTTGGATTACATAGGAGAA 2668
|||| |||||||||||||| | | | |||| |||||||||||||| ||||||||||||||
Sbjct 2632 GGGCCTGTGATGAATGATCGATCCTTGTGTGGAAGCATCATGTTGAATTACATAGGAGAA 2691
Query 2669 GAGAATAAAAACTGTCATTTTACTCAATCTTCTGAATTGTTGGATTATGATATGATAAGT 2728
|||||||| |||| ||| || |||||||||| ||||||||||||||||||| |||||||
Sbjct 2692 GAGAATAATAACTATCAATTGACTCAATCTTTTGAATTGTTGGATTATGAT--GATAAGT 2749
Query 2729 CATTGTTTATTATCAGTC 2746
||||||||||| ||||||
Sbjct 2750 CATTGTTTATTGTCAGTC 2767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136403918017
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5