BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491272
Length=1894
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34000.1 | Symbols: ABF3, DPBF5 | abscisic acid responsive e... 2529 0.0
> AT4G34000.1 | Symbols: ABF3, DPBF5 | abscisic acid responsive
elements-binding factor 3 | chr4:16295558-16298255 FORWARD
LENGTH=1985
Length=1985
Score = 2529 bits (1369), Expect = 0.0
Identities = 1710/1863 (92%), Gaps = 70/1863 (4%)
Strand=Plus/Plus
Query 82 ttttggagatttgttttttGATT-AAAGGAGATTCCTTTCCATTTTCACTATTATTTGCT 140
|||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct 118 TTTTGGAGATTTGTTTACTGATTAAAAGGAGATTCCTTTCCATTTTCAC---CATTTGCT 174
Query 141 CTGTTTTAGTACTTCATTGTGCATATATATCTC-TTTCAGATCTTTTGTTGGGGTTTAGC 199
||| ||| | |||||||||||| | ||||| || ||| |||||||||||| |||||||||
Sbjct 175 CTG-TTT-G-ACTTCATTGTGC-T-TATATTTCATTT-AGATCTTTTGTTTGGGTTTAGC 228
Query 200 TTTGGAACTGATAAAAATCTGATTTTGGGTCTC--TTTTGAGTTTTGGTTTTCTAAATTT 257
||||||||||||||||||||||||||| || | |||| | ||||||| | |||||||
Sbjct 229 TTTGGAACTGATAAAAATCTGATTTTGTCTCACGGCTTTG-GATTTGGTTCT-TAAATTT 286
Query 258 TGGT-ACT-T-TA-AA-----A---TCC-------A-G-AAGCTT-AGTAATGGGGTCTA 295
|||| | | | | || | ||| | | |||||| ||||||||||||||
Sbjct 287 TGGTAAATATCCAGAAGCTTGATCCTCCTAGTTGTACGAAAGCTTGAGTAATGGGGTCTA 346
Query 296 GATTAAACTTCAAGAGCTTTGTTGATGGTGTGAGT--G-AGCAGCCAACGGTGGGGACTA 352
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 347 GATTAAACTTCAAGAGCTTTGTTGATGGTGTGAGTGAGCAGCAGCCAACGGTGGGGACTA 406
Query 353 GTCTTCCATTGACGAGACAGAACTCTGTGTTTTCGTTAACCTTTGATGAGTTTCAGAACT 412
||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 407 GTCTTCCATTGACTAGGCAGAACTCTGTGTTCTCGTTAACCTTTGATGAGTTTCAGAACT 466
Query 413 CATGGGGTGGTGGAATTGGCAAGGATTTTGGGTCTATGAACATGGATGAGCTCTTGAAGA 472
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 467 CATGGGGTGGTGGAATTGGGAAAGATTTTGGGTCTATGAACATGGATGAGCTCTTGAAGA 526
Query 473 ACATTTGGACTGCTGAGGAAAGCCACTCAATCATGGGAAACAACACTAGTTTCAACAACA 532
||||||||||||| |||||||| || ||||| ||||||||||| || |||| || |||||
Sbjct 527 ACATTTGGACTGCAGAGGAAAGTCATTCAATGATGGGAAACAATACCAGTTACACCAACA 586
Query 533 TCAACAATGGTAATAGCGGAAACACTGTTATTAACGGCGGTGGTAACAACAATGGTGGGT 592
||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 587 TCAGCAATGGTAATAGTGGAAACACTGTTATTAACGGCGGTGGTAACAACATTGGTGGGT 646
Query 593 TAGCTGTTGGTGTGGGAGAAGAAACTGGTGGTTTTTTCACTGGTGGGAGTTTGCAGAGAC 652
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 647 TAGCTGTTGGTGTGGGAGGAGAAAGTGGTGGTTTTTTCACTGGTGGGAGTTTGCAGAGAC 706
Query 653 AAGGGTCGCTTACCTTGCCTCGTACCATTAGTCAGAAGAGGGTTGATGATGTCTGGAAGG 712
|||| || |||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 707 AAGGTTCACTTACCTTGCCTCGGACGATTAGTCAGAAAAGGGTTGATGATGTCTGGAAGG 766
Query 713 AGCTGATGAAGGAGGATGACATTGGAAATGGTGTTGGTAATGCTGGGACAGGCGGGATTC 772
|||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||
Sbjct 767 AGCTGATGAAGGAGGATGACATTGGAAATGGTGTTGTTAATGGTGGGACAAGCGGAATTC 826
Query 773 CGCAGAGGCAACAAACGTTGGGAGAAATGACTTTGGAGGAGTTTTTGGTCAGGGCTGGTG 832
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 827 CGCAGAGGCAACAAACGCTGGGAGAGATGACTTTGGAGGAGTTTTTGGTCAGGGCTGGTG 886
Query 833 TGGTTAGGGAAGAACCTCAACCCGTGGAGAGTGTAACTAACTTCAATGGCGGATTCTATG 892
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 887 TGGTTAGGGAAGAACCTCAACCGGTGGAGAGTGTAACTAACTTCAATGGCGGATTCTATG 946
Query 893 GATTTGGCAGTAATGGAGGTCTTGGGACAGCTGGTAATGGGTTTGTTGCTAACCAGCCTC 952
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||
Sbjct 947 GATTTGGCAGTAATGGAGGTCTTGGGACAGCTAGTAATGGGTTTGTTGCAAACCAACCTC 1006
Query 953 ATGATTTGTCTGGAAATGGA-TCAGTGGTGAGACCA-GATCTGCTGACAGCTCAAACTCA 1010
| |||||||| ||||||||| | || ||||||| || ||||||||||| |||||||||||
Sbjct 1007 AAGATTTGTCAGGAAATGGAGT-AGCGGTGAGA-CAGGATCTGCTGACTGCTCAAACTCA 1064
Query 1011 GCCACTACAGATGCAGCAG---C--------CA-CAG--AC----GGTGCAGCAGCCGCA 1052
||||||||||||||||||| | || ||| || |||||||||||||||
Sbjct 1065 GCCACTACAGATGCAGCAGCCACAGATGGTGCAGCAGCCACAGATGGTGCAGCAGCCGCA 1124
Query 1053 ACAGCTGATACAGAAGCAGGAGAGACCTTTTCCCAAACAGACCACTATCGCGTTTTCCAA 1112
||| |||||||||| ||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 1125 ACAACTGATACAGACGCAGGAGAGGCCTTTTCCCAAACAGACCACTATAGCATTTTCCAA 1184
Query 1113 CACTGCTGATGTAGTTAACCGTTCTCAACCTGCAACACAGTGCCAGGAAGTGAAGCCTTC 1172
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CACTGTTGATGTGGTTAACCGTTCTCAACCTGCAACACAGTGCCAGGAAGTGAAGCCTTC 1244
Query 1173 AATACTTGGAATTCGTAACCATCTTGTGAACAACAATCTACTGCAAGCTGTCGATTTTAA 1232
|||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1245 AATACTTGGAATTCATAACCATCCTATGAACAACAATCTACTGCAAGCTGTCGATTTTAA 1304
Query 1233 AACAGGGGTAACGGTTGCAGCAGTATCTCCTGGAAGCCAGATGTCACCTGATCTGACTCC 1292
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 AACAGGAGTAACGGTTGCAGCAGTATCTCCTGGAAGCCAGATGTCACCTGATCTGACTCC 1364
Query 1293 AAAGAGCGCCCTGGATGCATCTTTGTCTCCTGTTCCTTACATGTTTGGGCGAGTGAGAAA 1352
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1365 AAAGAGCGCCCTGGATGCATCTTTGTCCCCTGTTCCTTACATGTTTGGGCGAGTGAGAAA 1424
Query 1353 AACAGGTGCAGTTCTGGAGAAAGTGATTGAGAGAAGGCAAAAAAGGATGATAAAGAATAG 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 AACAGGTGCAGTTCTGGAGAAAGTGATTGAGAGAAGGCAAAAAAGGATGATAAAGAATAG 1484
Query 1413 GGAATCAGCTGCAAGATCCCGCGCTCGCAAGCAAGCTTATACGATGGAACTGGAAGCAGA 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 GGAATCAGCTGCAAGATCCCGCGCTCGCAAGCAAGCTTATACGATGGAACTGGAAGCAGA 1544
Query 1473 AATTGCGCAACTCAAAGAGTTAAATGAAGAGTTGCAGAGGAAACAAGTTGAAATCATGGA 1532
|||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 1545 AATTGCGCAACTCAAAGAATTGAATGAAGAGTTGCAGAAGAAACAAGTTGAAATCATGGA 1604
Query 1533 AAAGCAGAAAAACCAGCTCCTGGAGCCACTGCGCCAGCCATGGGGAATGGGATGCAAAAG 1592
|||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1605 AAAGCAGAAAAATCAGCTTCTGGAGCCTCTGCGCCAGCCATGGGGAATGGGATGCAAAAG 1664
Query 1593 GCAATGCTTGCGAAGGACATTAACGGGTCCCTGGTAGAGCCTATACTGGCGTCCAAGGAA 1652
||||||||||||||||||||| |||||||||||||||||| |||| ||||||| ||||||
Sbjct 1665 GCAATGCTTGCGAAGGACATTGACGGGTCCCTGGTAGAGCTTATAATGGCGTCTAAGGAA 1724
Query 1653 CTCAACAAAGAGCCTAAGTTATAGAACAACTCAGAAAATAGAAAGCTAGCTTGGTATGTA 1712
| |||||||| ||| ||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct 1725 CCCAACAAAGCGCCGAAGTTATAGAACAACTCAGAAGATAGAAAGCTAGCTTTGTACGTA 1784
Query 1713 GTTTAGGCAGGTGTTTCTGTGGGTGATTGTAAATCGTGAAGTGTGGCGGATTTGACAGAG 1772
|||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1785 GTTTAGGCAGGT-T--CTGTGGGTGATTGTAAATCTTGAAGTGTGGCGGATTTGACAGAG 1841
Query 1773 ATATATAAACAC-TCATCTGTTCTATTTTCCTGAAGCATCTTTTGGTTTTATCGTCCTGA 1831
||| |||||||| | ||||||||||||||||| || |||||||||||||||| ||||||
Sbjct 1842 ATAGATAAACACAT-ATCTGTTCTATTTTCCT-AA--ATCTTTTGGTTTTATCTTCCTGA 1897
Query 1832 TGTAATGGATCTTGATCATTTGTCTTGAACATCTTTGTGACTTAACCAGAGTGGATTTAT 1891
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1898 TGTAATGGATCTTTATCATTTGTCTTGAACATCTTTGTGACTTAACCAGAGTGAATTTAT 1957
Query 1892 CTT 1894
|||
Sbjct 1958 CTT 1960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93774618060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5