BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg491275
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
AT4G33980.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 952 0.0
> AT4G33980.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to karrikin; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: cold regulated gene 27 (TAIR:AT5G42900.3).
| chr4:16282696-16285059 REVERSE LENGTH=989
Length=989
Score = 952 bits (515), Expect = 0.0
Identities = 620/671 (92%), Gaps = 6/671 (1%)
Strand=Plus/Plus
Query 15 AGA-GAGGAGCCGCAGCGATGGAGAATGATTACACGGTGAATATTGTTTCTCTGGAGATG 73
||| |||||| ||| ||||||||||||||| ||||||||||||||| |||||||||| |
Sbjct 96 AGAGGAGGAGAAGCAACGATGGAGAATGATTGCACGGTGAATATTGTCTCTCTGGAGAAG 155
Query 74 GATCGTGATGTTGCCGAGTCGTCGGCTGAATCTCAGAGCGAGTCGACTCTATCGAACTCG 133
||||| |||||| | ||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 156 GATCGCGATGTTTCGGAGGCGTCGGCTGAATCTCAGAGCGAGTCGACTCTTTCGAACTCG 215
Query 134 CTCGAGTCCGGTGTTACGGCTGAGACCTCTCGTGCTGATGCTGATTCCAAACTGGATGAG 193
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 216 CTCGATTCCGGTGTTACGGCTGAGACCTCTCGTTCTGATGCTGATTCCAAACTGGATGAA 275
Query 194 TGTGCTGGTTGGACGAATGAGAAACACAACTCATATCTTGATTATTTAGAGAGCTCGTTT 253
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TGTACTGCTTGGACGAATGAGAAACACAACTCATATCTTGATTATTTAGAGAGCTCGTTT 335
Query 254 GTTAGGCAGTTGTATTCCTTCCTTGGAGGAGAGACTCAAAGACTTTCTAGAACCCGTGAT 313
|||||||| || || ||||| |||||||| | |||||| |||||||||||||| ||||||
Sbjct 336 GTTAGGCAATTATACTCCTTGCTTGGAGGTGGGACTCAGAGACTTTCTAGAACTCGTGAT 395
Query 314 GTGCAGTCTAAGTCTCACAAATCGA-CTGATCAGTTTACGGTCCTACAAAATGGCTGCTG 372
||||||||||| ||||| ||||| | ||||||||||||| |||||||||||||| |||||
Sbjct 396 GTGCAGTCTAACTCTCATAAATC-AGCTGATCAGTTTACCGTCCTACAAAATGGTTGCTG 454
Query 373 GCAGAATGTTAACTTTGGAAAGAAACAAGCTCATTTGGAGACTTCATCTGAATTTCGTTT 432
|||||| ||||||||||||||||||||| || |||||||||||||||||| ||||||||
Sbjct 455 GCAGAAGGTTAACTTTGGAAAGAAACAATCTTGTTTGGAGACTTCATCTGAGTTTCGTTT 514
Query 433 TCAGAAAAAATCATTGAGAAGTAAACCTGAAAATCCCAAGGGAAATTACACCGTGGGAAC 492
||| | ||| |||||||||| ||| ||||||||| |||| |||||||||||| |||||||
Sbjct 515 TCACAGAAATTCATTGAGAAATAAGCCTGAAAATTCCAACGGAAATTACACCATGGGAAC 574
Query 493 TGCTGTCCAAGGAGATGTGTTATGTCATGAAGAAACCAAACACTCAGAGGCGTCAGGGca 552
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 575 TACTGTCCAAGGAGATGTGTTATGTCATGACGAAACCAAACACTCAGAGGCGTCAGGGCA 634
Query 553 gaatttc--ag-agaagaagaagaagaagagaagggagaggtgagcagaaaacgagacag 609
||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 635 GAATTTCAGAGAAGAAGAAGAAGAAGAAGAGAAGGGAGAGGTGAGCAAAAAACGAGAAAG 694
Query 610 agaagCAAATAACGATGATAGTTCATTGAAGGAGGATCAGGTTGTGCCGGTAAGGATGGT 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 AGAAGCAAATAACGATGATAGTTCATTGAAGGAGGATCAGGTTGTGCCGGTAAGGATGGT 754
Query 670 GAAGCCCAGAA 680
|||||||||||
Sbjct 755 GAAGCCCAGAA 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43854410331
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5